Glyma19g09050 - SoyBase

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Report for Sequence Feature Glyma19g09050

Feature Type:	gene_model
Chromosome:	Gm19
Start:	10598683
stop:	10602485
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g09050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14500	AT	Annotation by Michelle Graham. TAIR10: aldose 1-epimerase family protein \| chr5:4674503-4676368 REVERSE LENGTH=306	SoyBase	E_val: 2.00E-157	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004034	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldose 1-epimerase activity	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1594	KOG	Uncharacterized enzymes related to aldose 1-epimerase	JGI		ISS
PTHR11122	Panther	APOSPORY-ASSOCIATED PROTEIN C-RELATED	JGI		ISS
PF01263	PFAM	Aldose 1-epimerase	JGI		ISS
UniRef100_B9S658	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldose 1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9S658_RICCO	SoyBase	E_val: 7.00E-176	ISS
UniRef100_I1N6Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g09050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g09050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g057200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g09050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g09050

Limit To All Plant Sequences

>Glyma19g09050.2   sequence type=transcript   gene model=Glyma19g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGATCACTTTTGCAAATTCTCTCCTCTTCAAAGTTATAAAAAGGGTCCCTCTTTGTTCACTCTCTTTGTGTTTTCTTTTTCTCAGTTTATAACTTTTTATCCATCGACATCAAAACAAGGACTCTTGGGAAAACGCAGAGTTATGGACACTGTCCTTTGAAACTCCAAACAAATAAAACAGCTCATAGTAGTATTATAGTAAAAGATAGCCTTCAAAGTACGCTAACCCATTTCTTCTTTTCGCATAACTCAATTGGAAATTGCTTCTTCCTTATTAGTTTTGCTTTCATCTGCTTGAAACTTTCTCGGATTTCTGAAGGATCTTTTTGTGTGACAAAAGGCTGGATTGGAAAAAAGGGAAAGTGAACCCTTTTATGAGTAGCATAAGGGCAAGGCTAAGGCCAAGACCGATGCCGTTGAATATATTTCCGGACATGGAAGGATTGCCCCGGATTATATTGACTGAGGCAACTGGTTCATCAGCAGAGGTGCTTCTATATGGGGGTCAGGTTGTTTCTTGGAAGAATGAACGAAAGGAAGAACTGCTTTTTATGAGCAGTAAGGCTAACTGGAAACAGTCTAAAGCAAACAGAGGAGGTATATCAGTCTGCTTTCCACAGTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGTCCTCTGTGGATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAGTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCAATAAGCAACTATTTATCGGTATCAGATATCAGTGAAGTACGTGTTGAGGGATTGGAGACACTTGATTACCTTGACAATCTGCTGAACAGATCAAGGTTCACAGAGCAGGCAGATGCAATTACTTTTGATGGCCAGATGGATAGGTTGTACTTGCGCACCCCCACAAAAATTGCAGTAATAGACCATGAGAAGAAAAGAACATTTGTACTGCAGAAGAATGCAATGCCAGATTGATATGGAATCCCGGATATAGGAAGGCCAAGGCTCTTCCTGATTTAGGGGATGCTGATTACAAGTTCATGATATGTGTGGATTCTGCAGCTATTGAAACCCCACTTATGTTGAAGCCCTATGAAGAATGGAAGGGCTATCAGGAGCTCTCTAATGTTTCATCAAGCTATTGCAGTGGACAATTGGATCCTTCTAAGGTTCTTTATGGTTTTCACTAAACACCATAATGCAGCCAATGGAGATTATTAGATTATAATGGACTTCACTCTCCTAATTAGTTAAACACTATAAGTGCACTACACGTGCATTCATACCATGCTGAGATTATAATAAAGTGAGAGCAACTAAATAATTGCGAGATGCTTCTTTGTATTCATACTCATGTCAATAAATAAGTTGCATTATTACAGTATTATCCATTGGACTAGACAGTGTGTTTGTAAGGTTCCTATAAAATCTAGCAATTGAGCTTAGTACTTTCTTTTGTTGATA

Coding sequences of Glyma19g09050

Limit To All Plant Sequences

>Glyma19g09050.1   sequence type=CDS   gene model=Glyma19g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCATAAGGGCAAGGCTAAGGCCAAGACCGATGCCGTTGAATATATTTCCGGACATGGAAGGATTGCCCCGGATTATATTGACTGAGGCAACTGGTTCATCAGCAGAGGTGCTTCTATATGGGGGTCAGGTTGTTTCTTGGAAGAATGAACGAAAGGAAGAACTGCTTTTTATGAGCAGTAAGGCTAACTGGAAACAGTCTAAAGCAAACAGAGGAGGTATATCAGTCTGCTTTCCACAGTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGTCCTCTGTGGATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAGTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCAATAAGCAACTATTTATCGGTATCAGATATCAGTGAAGTACGTGTTGAGGGATTGGAGACACTTGATTACCTTGACAATCTGCTGAACAGATCAAGGTTCACAGAGCAGGCAGATGCAATTACTTTTGATGGCCAGATGGATAGGTTGTACTTGCGCACCCCCACAAAAATTGCAGTAATAGACCATGAGAAGAAAAGAACATTTGTACTGCAGAAGAATGCAATGCCAGATGCAGTGATATGGAATCCCGGATATAGGAAGGCCAAGGCTCTTCCTGATTTAGGGGATGCTGATTACAAGTTCATGATATGTGTGGATTCTGCAGCTATTGAAACCCCACTTATGTTGAAGCCCTATGAAGAATGGAAGGGCTATCAGGAGCTCTCTAATGTTTCATCAAGCTATTGCAGTGGACAATTGGATCCTTCTAAGGTTCTTTATGGTTTTCACTAA

>Glyma19g09050.2   sequence type=CDS   gene model=Glyma19g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCATAAGGGCAAGGCTAAGGCCAAGACCGATGCCGTTGAATATATTTCCGGACATGGAAGGATTGCCCCGGATTATATTGACTGAGGCAACTGGTTCATCAGCAGAGGTGCTTCTATATGGGGGTCAGGTTGTTTCTTGGAAGAATGAACGAAAGGAAGAACTGCTTTTTATGAGCAGTAAGGCTAACTGGAAACAGTCTAAAGCAAACAGAGGAGGTATATCAGTCTGCTTTCCACAGTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGTCCTCTGTGGATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAGTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCAATAAGCAACTATTTATCGGTATCAGATATCAGTGAAGTACGTGTTGAGGGATTGGAGACACTTGATTACCTTGACAATCTGCTGAACAGATCAAGGTTCACAGAGCAGGCAGATGCAATTACTTTTGATGGCCAGATGGATAGGTTGTACTTGCGCACCCCCACAAAAATTGCAGTAATAGACCATGAGAAGAAAAGAACATTTGTACTGCAGAAGAATGCAATGCCAGATTGA

Predicted protein sequences of Glyma19g09050

Limit To All Plant Sequences

>Glyma19g09050.1   sequence type=predicted peptide   gene model=Glyma19g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIRARLRPRPMPLNIFPDMEGLPRIILTEATGSSAEVLLYGGQVVSWKNERKEELLFMSSKANWKQSKANRGGISVCFPQFGNLGSLEQHGSARNRLWSLDRDPSPLPPSDNQSSVDLIIKSTGVDLKNRPCSFEFRLRISLSAGKLILIPRVRNTDNKTLSFTLSISNYLSVSDISEVRVEGLETLDYLDNLLNRSRFTEQADAITFDGQMDRLYLRTPTKIAVIDHEKKRTFVLQKNAMPDAVIWNPGYRKAKALPDLGDADYKFMICVDSAAIETPLMLKPYEEWKGYQELSNVSSSYCSGQLDPSKVLYGFH*

>Glyma19g09050.2   sequence type=predicted peptide   gene model=Glyma19g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIRARLRPRPMPLNIFPDMEGLPRIILTEATGSSAEVLLYGGQVVSWKNERKEELLFMSSKANWKQSKANRGGISVCFPQFGNLGSLEQHGSARNRLWSLDRDPSPLPPSDNQSSVDLIIKSTGVDLKNRPCSFEFRLRISLSAGKLILIPRVRNTDNKTLSFTLSISNYLSVSDISEVRVEGLETLDYLDNLLNRSRFTEQADAITFDGQMDRLYLRTPTKIAVIDHEKKRTFVLQKNAMPD*

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