Glyma19g08990 - SoyBase

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Report for Sequence Feature Glyma19g08990

Feature Type:	gene_model
Chromosome:	Gm19
Start:	10507747
stop:	10508458
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g08990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51510	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr3:19109118-19109842 FORWARD LENGTH=181	SoyBase	E_val: 1.00E-36	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N6Z8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Z8_SOYBN	SoyBase	E_val: 2.00E-79	ISS
UniRef100_Q9SCZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g51510/F26O13_150 n=1 Tax=Arabidopsis thaliana RepID=Q9SCZ8_ARATH	SoyBase	E_val: 5.00E-34	ISS

Expression Patterns of Glyma19g08990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g08990 not represented in the dataset	Glyma19g08990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g08990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g057100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g08990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g08990

Limit To All Plant Sequences

>Glyma19g08990.2   sequence type=CDS   gene model=Glyma19g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGCAGTGCAAAATCAACATGTATCACACCCTACAGCATTTTTGGGAGTTCCTAAGAACAATCAGAGAAAAATGAAAACACCGCACAGGTTAGTTGTGGTTGCGGTGACTCAAGGCTCTACTGAATCAAGCAAGTCCGATGAAAAAATCCCTTCGTGGGCCAAACCGAACTTCGATGAACCACCGCCATGGGCCCAGGACGAGCCCAACAACAACAGTTCACAACAAGAAGGATTTGAGATCCCGTTCTATGCTTATTTGCTTGCCTCTGCTATCACTGCAATTGCCACTATAGGTTCCCTTTTCGAATATGTATATCAAAAGCCTATTTTCGGAGTATTAAGCTTTGACAGCCTGTTTTATGCTCCCTTGCTTGGTTTTTTTGTCTTCACCGACATTCCCTCATCGGAAGCAGAGGAACAAGATAAGAGGGATGACTATTTATAG

Predicted protein sequences of Glyma19g08990

Limit To All Plant Sequences

>Glyma19g08990.2   sequence type=predicted peptide   gene model=Glyma19g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAVQNQHVSHPTAFLGVPKNNQRKMKTPHRLVVVAVTQGSTESSKSDEKIPSWAKPNFDEPPPWAQDEPNNNSSQQEGFEIPFYAYLLASAITAIATIGSLFEYVYQKPIFGVLSFDSLFYAPLLGFFVFTDIPSSEAEEQDKRDDYL*

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