SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40530 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:16234551-16236100 FORWARD LENGTH=287 | SoyBase | E_val: 1.00E-122 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG3045 | KOG | Predicted RNA methylase involved in rRNA processing | JGI | ISS | |
| PTHR12787 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05148 | PFAM | Hypothetical methyltransferase | JGI | ISS | |
| UniRef100_G7IT40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA-processing protein n=2 Tax=Medicago truncatula RepID=G7IT40_MEDTR | SoyBase | E_val: 4.00E-145 | ISS |
| UniRef100_I1N6Z6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N6Z6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g08930 not represented in the dataset |
Glyma19g08930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g056800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g08930.2 sequence type=transcript gene model=Glyma19g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAAAATTTATAGAAAACAAAATATTTTCTGTTTGGCACTTCTGCAAAGCTCAAACTCTCGGACTCAAACACACAGCACGACGAAACCTAGCAGCCTCACGCCCTCATCGCAGCAGGGACCTAGCCGTCGCCGGAGACGCACTGAGTCTGAGAGCAGCGGTGACTAAATCAGGTTTGTCAAAGAGGAAAAGGAGAGTTACGATTCAGGTTTGAAGCACTAAATCAATCAAAATTGTAGCAATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGTGTATTCAATGTCATCTGGATGAGAGTTAAACATTTTTCTTTTTTTTTTTCTTTTAGATCAGCATGGTTAGTAAATCATCAAAGTTATTGTAGTAATTGGTTTCTCGGCCTCATTATTATTCTTTGATTTTAAGTGCGTATGGGGAGTTTGCTTGGTTTACAAATTTGCTACGACCGTTTATTGAATATCAGATAGGGTGACTTCACTTAAAT
>Glyma19g08930.1 sequence type=CDS gene model=Glyma19g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGA >Glyma19g08930.2 sequence type=CDS gene model=Glyma19g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGA
>Glyma19g08930.1 sequence type=predicted peptide gene model=Glyma19g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGESKKRKRHRNKRGGKEEQPVLPSPCAKRTKLKEPSSFLQKMRARLSGGHFRMINEKLYTCTGEEALDYFKEEPSLFDVYHTGYKTQMSNWPEQPVNVIIKWLKKQSLSFVVADFGCGEALIAKSVKNEVFSLDLVSNDPNVIACNMENTPLDSSSVDVAIFCLSLMGTNYQSYLEESYRLLKPGGWLLIAEVKSRFDPNTGGADPKKFSNAISELGFSSVKQDFSNKMFILFFFTKKENQISKRKEIEWPMLKPCLYKRR* >Glyma19g08930.2 sequence type=predicted peptide gene model=Glyma19g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGESKKRKRHRNKRGGKEEQPVLPSPCAKRTKLKEPSSFLQKMRARLSGGHFRMINEKLYTCTGEEALDYFKEEPSLFDVYHTGYKTQMSNWPEQPVNVIIKWLKKQSLSFVVADFGCGEALIAKSVKNEVFSLDLVSNDPNVIACNMENTPLDSSSVDVAIFCLSLMGTNYQSYLEESYRLLKPGGWLLIAEVKSRFDPNTGGADPKKFSNAISELGFSSVKQENQISKRKEIEWPMLKPCLYKRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
