Glyma19g08720 - SoyBase

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Report for Sequence Feature Glyma19g08720

Feature Type:	gene_model
Chromosome:	Gm19
Start:	10256847
stop:	10259868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g08720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14480	AT	Annotation by Michelle Graham. TAIR10: beta-1,4-N-acetylglucosaminyltransferase family protein \| chr5:4667984-4669693 FORWARD LENGTH=387	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003830	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR12224	Panther	BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE	JGI		ISS
PF04724	PFAM	Glycosyltransferase family 17	JGI		ISS
UniRef100_B9S665	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetylglucosaminyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S665_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N6Z4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Z4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g08720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g08720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g056500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g08720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g08720

Limit To All Plant Sequences

>Glyma19g08720.1   sequence type=CDS   gene model=Glyma19g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAGGGCTATTATAATTCTAAGAAGACTGATGATATCTGCGATGATGTTTGTGGACAGAATGGAACTCCTGCAGCACTGAGCATGTCAAGACTCAAGTGTATTCTAAAGGGATTGGACTTCAAAACCTATATATTTCTGTTTGTGATTGTTCCTGTTGGCATCTTCGGTCTCTATTTGCACGGGCAGAAAATCTCCTACTTTCTAAGACCACTGTGGGAATCTCCTCCAAAGCCTTTCCATGAAATCCCTCACTATTATCACGAGAACGTGTCAATGGAGTCTCTCTGCAAGCTTCATGGCTGGGGGATTCGTGAGTCACCGAGACGAGTTTTTGACGCTGTTTTGTTCAGCAATGAAGTCGACATCCTCACTATCCGTTGGAAAGAAATGCAGCCTTACGTGACGCAGTATGTACTCCTTGAATCAAACTCAACATTTACCGGATTTGTCAAACCATTGCTATTTTCGGGCAATAGGGACAAGTTCAAGTTTCTTGAGTCGCGCCTAACATACGGGGTGATTGGAGGGAGATTCAAGAAAAAAGAAAATCCTTTTATTGAGGAGGCTTATCAAAGAGTTGCCCTGGATCAGCTTCTGAGGATAGCAGGCATAGAAGACGACGATCTCTTGATAATGTCCGATGTTGATGAGATTCCAAGCGCGCACACAATTAACCTCTTGAGGTGGTGTGATGGGATCCCTCCAGTTCTTCATCTTCAACTAAAGAACTATTTATACTCTTTCGAGTTCTTTTTGGACAACAAAAGTTGGAGGGCGTCAATCCATAGATACCAGACCGGCAAGACTTGGTATGCACACTATCGACAGGCTGATGTGCTGCTGGCCGATGCTGGCTGGCATTGTAGCTTCTGTTTTCGTCATATCAACGAATTCATATTTAAGATGAAAGCTTACAGCCATTACGATCGCGTGCGGTTCCCTCACTACTTGAACCCTGACAGGATTCAGGATGTTATATGCAAGGGGGCTGACTTATTCGACATGCTTCCAGAAGAGTATACATTCAAGGAGATCATTGGGAAATTGGGACCTATTCCTCATTCTTACTCAGCAGTGCATCTTCCAGCATATTTATTGAATAATGCAGAGAGATTCAGGTTTTTGTTACCGGGTAACTGCAGAAGAGAAAGGGGCTGA

Predicted protein sequences of Glyma19g08720

Limit To All Plant Sequences

>Glyma19g08720.1   sequence type=predicted peptide   gene model=Glyma19g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGYYNSKKTDDICDDVCGQNGTPAALSMSRLKCILKGLDFKTYIFLFVIVPVGIFGLYLHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMESLCKLHGWGIRESPRRVFDAVLFSNEVDILTIRWKEMQPYVTQYVLLESNSTFTGFVKPLLFSGNRDKFKFLESRLTYGVIGGRFKKKENPFIEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDGIPPVLHLQLKNYLYSFEFFLDNKSWRASIHRYQTGKTWYAHYRQADVLLADAGWHCSFCFRHINEFIFKMKAYSHYDRVRFPHYLNPDRIQDVICKGADLFDMLPEEYTFKEIIGKLGPIPHSYSAVHLPAYLLNNAERFRFLLPGNCRRERG*

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