Glyma19g08510 - SoyBase

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Report for Sequence Feature Glyma19g08510

Feature Type:	gene_model
Chromosome:	Gm19
Start:	9969743
stop:	9974469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g08510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01600	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 44 \| chr3:229365-231105 FORWARD LENGTH=370	SoyBase	E_val: 3.00E-86	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9GI76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9GI76_POPTR	SoyBase	E_val: 2.00E-117	ISS
UniRef100_UPI000233AC1F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AC1F related cluster n=1 Tax=unknown RepID=UPI000233AC1F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g08510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g08510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g056400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g08510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g08510

Limit To All Plant Sequences

>Glyma19g08510.2   sequence type=transcript   gene model=Glyma19g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTAGCTTGGTGAACAAGGTTTACTGGCACTTACTCGGTTTTCGAAGCTTCACCTTCCATTCCACACACAAACCACAGGTCCGGAGTTCCGTTAGGTCACTCGTGGGGCCCATCCAAACCGCAGGCGCGTCTCTTCGTAGTGGAAAACACCGAAGACGAGGCACAGGTTCGGAAACCCAACCTCTTCCATGGCAATTCCAACGCACATCCTTGGTGGAATTTCCCGCTCACTTGTACACACTGTCGCTTTCTTTGTCTTTGCCTACTGAGAAATTGCAACAAAAAAAACGTTGTAGAGGTTGAATACGCTGAACTTGTCTCTCGAATGCGTTTTCTTTGTTGCTCTTCTTCGATACAATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACTCAGCAACACATGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGAATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTATAATAGAAGATGGAGCACATAAGGGCTTTAAGAAGATCATGGTTCTCTACGTAAGATCCAGTGAGAATGGGTCCAGGTCTTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGTAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCAAAAATTTTCTGTCAACAGCAAAAGCAGACTGAGAAAAATGAGGGCAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAGGTCCTAGAACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCTGGATACCAAGACAATCCCTGGAGAATCACATGCTCCACAATCAGATATTCAGGATCAAGACTTTACTGGCAATGCTGCATGGCTAGCTGGCGAATCGCAGGCTGAGGAAAGCACCAAATATGATGGCTGTGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTATATTAAATGACCCTGGATTGGACTCCACCAATCTTGAAGACATTGCAGGCTATGCTACCCAAAGGGCTAGAAATGATAATGAATCTTGCGGAATTTCTGTTCTGGATTCACTGGAATTGGATACTCCTGATTTTGATCTTTCTAGTTTGTATTTTTGTTCTCAAGACAGTATCCTTGATTGGATGGACAGGTTATGAGGTGCTCTATGTATGATGCCCTTTTTGGTACCAAATCCAGAAGTTGTTCCATTCAATTGCCGGGGTAGTGCATCCTTTTTCTCCCTTTCATGCTTCAATTGCTGTGGTTTTTCTTCTTCTGGATGCAGCAAATATAGTGCATGAAGTTTTGGTCGTCATCATCTGATGTTTCATGCTAGTAAGCGGAAATAATACTACTTTCTTTGGTTCCTCAACTCTTGCAACTTTTGTCATATTATGAAGTTAAGCTCTTATCTAGCTAGAGCTGGAGTTTTGCCTTCTTCATTGGAGGTTATTTGTGTGAGAAATTGTTTTTGGAGGCTATTTGTTTCTTCATGGCCAATTTAAACTTGTGCTTTGGCTCATTATGTCAGCCGTGAAAGTGAATACTACTTTGGTGATGAAATCCGAAATGGTGTAGTTGACTATATGTACTAGATTTCAAGATGGTGAGTGTTCTATGTGAATATTGATAACATAATTATTGCGTACAATTATTTTCAAGGCAAAATATTCTCTACACTAGTAGTTCCATTT

Coding sequences of Glyma19g08510

Limit To All Plant Sequences

>Glyma19g08510.1   sequence type=CDS   gene model=Glyma19g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGAATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTATAATAGAAGATGGAGCACATAAGGGCTTTAAGAAGATCATGGTTCTCTACGTAAGATCCAGTGAGAATGGGTCCAGGTCTTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGTAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCAAAAATTTTCTGTCAACAGCAAAAGCAGACTGAGAAAAATGAGGGCAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAGGTCCTAGAACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCTGGATACCAAGACAATCCCTGGAGAATCACATGCTCCACAATCAGATATTCAGGATCAAGACTTTACTGGCAATGCTGCATGGCTAGCTGGCGAATCGCAGGCTGAGGAAAGCACCAAATATGATGGCTGTGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTATATTAAATGACCCTGGATTGGACTCCACCAATCTTGAAGACATTGCAGGCTATGCTACCCAAAGGGCTAGAAATGATAATGAATCTTGCGGAATTTCTGTTCTGGATTCACTGGAATTGGATACTCCTGATTTTGATCTTTCTAGTTTGTATTTTTGTTCTCAAGACAGTATCCTTGATTGGATGGACAGGTTATGA

>Glyma19g08510.2   sequence type=CDS   gene model=Glyma19g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACTCAGCAACACATGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGAATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTATAATAGAAGATGGAGCACATAAGGGCTTTAAGAAGATCATGGTTCTCTACGTAAGATCCAGTGAGAATGGGTCCAGGTCTTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGTAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCAAAAATTTTCTGTCAACAGCAAAAGCAGACTGAGAAAAATGAGGGCAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAGGTCCTAGAACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCTGGATACCAAGACAATCCCTGGAGAATCACATGCTCCACAATCAGATATTCAGGATCAAGACTTTACTGGCAATGCTGCATGGCTAGCTGGCGAATCGCAGGCTGAGGAAAGCACCAAATATGATGGCTGTGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTATATTAAATGACCCTGGATTGGACTCCACCAATCTTGAAGACATTGCAGGCTATGCTACCCAAAGGGCTAGAAATGATAATGAATCTTGCGGAATTTCTGTTCTGGATTCACTGGAATTGGATACTCCTGATTTTGATCTTTCTAGTTTGTATTTTTGTTCTCAAGACAGTATCCTTGATTGGATGGACAGGTTATGA

Predicted protein sequences of Glyma19g08510

Limit To All Plant Sequences

>Glyma19g08510.1   sequence type=predicted peptide   gene model=Glyma19g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFINEFIPTLEGDQGICYTHPENLPGAKKDGSYVHFFHRTTNAYATGQRKRRKIHHQQGLTEEHVRWHKTGKTKAIIEDGAHKGFKKIMVLYVRSSENGSRSYKSNWVMHQYHLGTVEEEKEGEYVVSKIFCQQQKQTEKNEGNPMAEDPDNIISRTGPRTPKPNPPNPPRAGKSVDCDDNIDETVLLSSALDTKTIPGESHAPQSDIQDQDFTGNAAWLAGESQAEESTKYDGCDDILLCKEILDSSAILNDPGLDSTNLEDIAGYATQRARNDNESCGISVLDSLELDTPDFDLSSLYFCSQDSILDWMDRL*

>Glyma19g08510.2   sequence type=predicted peptide   gene model=Glyma19g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCSYHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLAAKCGIGNTQQHMFINEFIPTLEGDQGICYTHPENLPGAKKDGSYVHFFHRTTNAYATGQRKRRKIHHQQGLTEEHVRWHKTGKTKAIIEDGAHKGFKKIMVLYVRSSENGSRSYKSNWVMHQYHLGTVEEEKEGEYVVSKIFCQQQKQTEKNEGNPMAEDPDNIISRTGPRTPKPNPPNPPRAGKSVDCDDNIDETVLLSSALDTKTIPGESHAPQSDIQDQDFTGNAAWLAGESQAEESTKYDGCDDILLCKEILDSSAILNDPGLDSTNLEDIAGYATQRARNDNESCGISVLDSLELDTPDFDLSSLYFCSQDSILDWMDRL*

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