Glyma19g08500 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g08500

Feature Type:	gene_model
Chromosome:	Gm19
Start:	9934875
stop:	9938881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g08500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40540	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:16237630-16239470 FORWARD LENGTH=353	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF83	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S662	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase atn1, putative n=1 Tax=Ricinus communis RepID=B9S662_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N6Z2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Z2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g08500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g08500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g056300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g08500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g08500

Limit To All Plant Sequences

>Glyma19g08500.1   sequence type=CDS   gene model=Glyma19g08500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCTGGAAATGAGGTTCACTCAATTGTGGAGTTCAATTTGGATGCTAAGTGGCTTATAGATCCCAAGCAACTATTTGTTGGGCCTAAAATTGGGGAAGGTGCTCACGCCAAAGTGTATGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAGCAGATTTCTAGGAGAGAGGCTCGGTTTGCCAGAGAGATTGCCATGCTATCTAGAGTTCAACACAAAAATCTAGTCAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATTGTAACTGAACTTCTCTTAGGTGGAACATTGCGCAAATATCTGTGGAGTATCCGGCCAAAGTGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGAAGATCATAAAGCAGTTAAACTAGCCGATTTCGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGATGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTATAGCTTTGCTATAGTGTTGTGGGAACTCGTCCATAATAAGTTACCTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAATAATAGAGATGCTGCTTCGATATCTAACCACCATTTCACCGTCCAAGCCAGTTGTTCCAATGCGAATCACTTCTAAGAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGGAGAGATGATTCTGGAGAAACCCCAAAAGGCAATATTGAAGGCAGGTCTAAAGGGTTTTTCTTCTGCTGTTACTGA

Predicted protein sequences of Glyma19g08500

Limit To All Plant Sequences

>Glyma19g08500.1   sequence type=predicted peptide   gene model=Glyma19g08500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSGNEVHSIVEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFAREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDVRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELVHNKLPFEGMSNLQAAYAAAFKNTRPSADELPEDLALIVTSCWKEDPNDRPNFSQIIEMLLRYLTTISPSKPVVPMRITSKNAVLPPESPGTSALMAGRDDSGETPKGNIEGRSKGFFFCCY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain