Glyma19g08050 - SoyBase

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Report for Sequence Feature Glyma19g08050

Feature Type:	gene_model
Chromosome:	Gm19
Start:	9621030
stop:	9627601
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g08050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27460	AT	Annotation by Michelle Graham. TAIR10: SGF29 tudor-like domain \| chr3:10159537-10161994 REVERSE LENGTH=270	SoyBase	E_val: 4.00E-150	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3038	KOG	Histone acetyltransferase SAGA associated factor SGF29	JGI		ISS
PTHR21539	Panther	UNCHARACTERIZED	JGI		ISS
PF07039	PFAM	SGF29 tudor-like domain	JGI		ISS
UniRef100_F4IWI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SGF29 tudor-like domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IWI8_ARATH	SoyBase	E_val: 9.00E-147	ISS
UniRef100_I1N6Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N6Z0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g08050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g08050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g055900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g08050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g08050

Limit To All Plant Sequences

>Glyma19g08050.2   sequence type=transcript   gene model=Glyma19g08050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATAAAAAGCGGAGGATAAACTAAATATCCCACCTTGTAAAATTTGACACGAAAAAAATAAAATAAAAATTGGAAATTCCAATTCCGCTCTCGCTTTTCGATTTCGGATTTTGATAGCAACGTTGGAAGGAAAGGTGAGAGCAGAATCGTTGGAAGAATCTGGTATTGTGTCGTGGTTGTTGTTTTCGCGATCAAAACGATGTCGTCGCCGGACATTGTCTCGATATTGGATAACTCGAAGGAGCTCGATCGGGTTAGGAAAGAACAGGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAACTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGAAGGTAATGAGCAGAAAAGGAAACGAGTGAAGACTGAGTCAGATATTTCAAGGCTAACTCCTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGAATTTGAAGTACTAGATGAGGAACCAGGTGATGATGAAGAAAGCAGTGGCCAAAGACAATACAAGCTTCCCATGGCAAATATCATTCCTTTTCCCAAGAGTAATGATCCTTCTAGCGCTCAAGATTTCCCTCCTGGAAGACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCATCGCAGAAGGAAGACCGAGGATTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAATGAGTGAGTTTAAGCTACTTATAGTTGTGTATAAAGTAGAAACTAGACTATTGCATATGTGCCACTTGTGTAATATGCTCCATGTGTTGTGGTTTGTAACTTGTAAGAATGACATTGCTACCTAATTTCAAACATGTAAGAATGACACTGCAGTTCAATTTCACGTTACCTAGAAATGATAAATATCCCTGGTTAGTCTCTAACAACTTTGTCGTA

Coding sequences of Glyma19g08050

Limit To All Plant Sequences

>Glyma19g08050.1   sequence type=CDS   gene model=Glyma19g08050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCCGGACATTGTCTCGATATTGGATAACTCGAAGGAGCTCGATCGGGTTAGGAAAGAACAGGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAACTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGGAAAAGAAGGTAATGAGCAGAAAAGGAAACGAGTGAAGACTGAGTCAGATATTTCAAGGCTAACTCCTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGAATTTGAAGTACTAGATGAGGAACCAGGTGATGATGAAGAAAGCAGTGGCCAAAGACAATACAAGCTTCCCATGGCAAATATCATTCCTTTTCCCAAGAGTAATGATCCTTCTAGCGCTCAAGATTTCCCTCCTGGAAGACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCATCGCAGAAGGAAGACCGAGGATTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAATGA

>Glyma19g08050.2   sequence type=CDS   gene model=Glyma19g08050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCCGGACATTGTCTCGATATTGGATAACTCGAAGGAGCTCGATCGGGTTAGGAAAGAACAGGAGGATATTCTGTCGGAGATCAACAAGCTTCACAAGAAGCTTCAAGCAACTCCTGAAGTGGTTGAGAAGCCTGGGGATAACTCATTGGCAAGGCTGAAATTTTTGTATACTCAAGCAAAAGAACTTTCAGAAAGTGAAGCAAGTATTTCCAACTTACTGATAAACCAAATTGATGCCCTACTGCCTACGGGTCCACAAGGGCAAACACGAAGAAGAATAGAAGGTAATGAGCAGAAAAGGAAACGAGTGAAGACTGAGTCAGATATTTCAAGGCTAACTCCTAGTATGCGAGGTCAACTTGAGGCTTGTGCCAATCTTAAAGGTGAACAGGTAGCAGCTAGGGTCACACCACGAAATGCCGATAAGGATGAATGGTTTGTCGTAAAAGTGATTCATTTTGATAAGGAATCAAAGGAATTTGAAGTACTAGATGAGGAACCAGGTGATGATGAAGAAAGCAGTGGCCAAAGACAATACAAGCTTCCCATGGCAAATATCATTCCTTTTCCCAAGAGTAATGATCCTTCTAGCGCTCAAGATTTCCCTCCTGGAAGACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCATCGCAGAAGGAAGACCGAGGATTACGTGTTGGAATTTGATGATGATGAGGAAGATGGATCTTTACCACAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTTCCAGAAGGACATCGCCAATGA

Predicted protein sequences of Glyma19g08050

Limit To All Plant Sequences

>Glyma19g08050.1   sequence type=predicted peptide   gene model=Glyma19g08050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPDIVSILDNSKELDRVRKEQEDILSEINKLHKKLQATPEVVEKPGDNSLARLKFLYTQAKELSESEASISNLLINQIDALLPTGPQGQTRRRIGKEGNEQKRKRVKTESDISRLTPSMRGQLEACANLKGEQVAARVTPRNADKDEWFVVKVIHFDKESKEFEVLDEEPGDDEESSGQRQYKLPMANIIPFPKSNDPSSAQDFPPGRHVLAVYPGTTALYKATVVQGHRRRKTEDYVLEFDDDEEDGSLPQRTVPFHKVVPLPEGHRQ*

>Glyma19g08050.2   sequence type=predicted peptide   gene model=Glyma19g08050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPDIVSILDNSKELDRVRKEQEDILSEINKLHKKLQATPEVVEKPGDNSLARLKFLYTQAKELSESEASISNLLINQIDALLPTGPQGQTRRRIEGNEQKRKRVKTESDISRLTPSMRGQLEACANLKGEQVAARVTPRNADKDEWFVVKVIHFDKESKEFEVLDEEPGDDEESSGQRQYKLPMANIIPFPKSNDPSSAQDFPPGRHVLAVYPGTTALYKATVVQGHRRRKTEDYVLEFDDDEEDGSLPQRTVPFHKVVPLPEGHRQ*

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