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Report for Sequence Feature Glyma19g07750

Feature Type:gene_model
Chromosome:Gm19
Start:9317070
stop:9321291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g07750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40670AT Annotation by Michelle Graham. TAIR10: PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270 SoyBaseE_val: 3.00E-110ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2913 KOG Predicted membrane protein JGI ISS
PTHR13131Panther CYSTINOSIN JGI ISS
PTHR13131:SF5Panther gb def: agcp2411 [anopheles gambiae str. pest] JGI ISS
PF04193PFAM PQ loop repeat JGI ISS
UniRef100_D7MJ50UniRef Annotation by Michelle Graham. Most informative UniRef hit: PQ-loop repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJ50_ARALL SoyBaseE_val: 1.00E-108ISS
UniRef100_I1N6Y3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Y3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g07750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g07750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g07750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g07750
>Glyma19g07750.1   sequence type=CDS   gene model=Glyma19g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTTGGAACTCATTTCCATTAGAAGTGATCTACCAAGTACTTGGTTGGTTAGCTTTTCTTTCATGGTCAGTTGCTGGCTACCCACAACTCATCTTGAATTTTCGTAGGAAAAGTGTGGTGGGATTAAGCTTGGATTATGAGATTCTGAACTTCACCAAGCAGTGGTCATATCTGATATACAATGCTTCCCTCTTCTTTAGTCCTGCAATTCAGAAGCAGTATTTTGAGAAACATACTCTAAGAATTTCTATGGCAAGCAATATGATTCCTGTAGCCGCTAATGATGTTGCTTTCTCCATTCATTCAGTCATATTAAATTTAATTATACTGTCCCAAATTTCAATGTTTGAACGAGGAAATCAGAAGTTCTCCAACTATGCCATTGCAATAGTTGTTGTAGTGTGGTTTAGTGTTGCTGTTTGTTTTTTCATAGCATTGCATAGCCAATCTTGGCTTTGGCTAATCTCCATCTTCAACACAATTCAAGCAGTTATGATCCTCATCAAATATTTTCCGCAGGTCAGAATGCTTTACCCTCCTCCATATTATGTTCTGCATGTAGCATGTTTGGCATTCATGAACTTTTTGAGAAAGAGCACAGATGGATTTAGCATTGGCTCTGTTCTCCTTGATTTTTCTGGAGGGGTCTTTAATTATTCACAAATGCTTGTGCAGTCCAAAGATCAAGGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTGGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTACCCTGACAACAAGAAAGGGCTTACTTCTAAAAATTCCGAAGAAATCAACCGACCACTAGTCTGTGAAAGTCCAATAGATCAACAAACCAAAGGTTCGGTTAAATGTTCATATCAGTCTCCTGCAGAAGTATAA
Predicted protein sequences of Glyma19g07750
>Glyma19g07750.1   sequence type=predicted peptide   gene model=Glyma19g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSWNSFPLEVIYQVLGWLAFLSWSVAGYPQLILNFRRKSVVGLSLDYEILNFTKQWSYLIYNASLFFSPAIQKQYFEKHTLRISMASNMIPVAANDVAFSIHSVILNLIILSQISMFERGNQKFSNYAIAIVVVVWFSVAVCFFIALHSQSWLWLISIFNTIQAVMILIKYFPQVRMLYPPPYYVLHVACLAFMNFLRKSTDGFSIGSVLLDFSGGVFNYSQMLVQSKDQGSWVNFYGNIGKVFISLVSIFYDSILMCQHYVMYPDNKKGLTSKNSEEINRPLVCESPIDQQTKGSVKCSYQSPAEV*






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