Report for Sequence Feature Glyma19g07740
Feature Type: gene_model
Chromosome: Gm19
Start: 9306859
stop: 9310899
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g07740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40670 AT
Annotation by Michelle Graham. TAIR10: PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270
SoyBase E_val: 3.00E-125 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2913
KOG
Predicted membrane protein
JGI ISS
PTHR13131 Panther
CYSTINOSIN
JGI ISS
PTHR13131:SF5 Panther
gb def: agcp2411 [anopheles gambiae str. pest]
JGI ISS
PF04193 PFAM
PQ loop repeat
JGI ISS
UniRef100_D7MJ50 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PQ-loop repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJ50_ARALL
SoyBase E_val: 2.00E-123 ISS
UniRef100_UPI000233EA0A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EA0A related cluster n=1 Tax=unknown RepID=UPI000233EA0A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g07740
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g07740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g055100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g07740
Coding sequences of Glyma19g07740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g07740.1 sequence type=CDS gene model=Glyma19g07740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTCCCTGGAACTCATTTCCATTAGAAGTGATCTACCAAGTATTGGGATGGTTAGCTTTCCTTTCATGGTCAGTTGCTGGCTATCCACAACTCATCTTGAATTTTCGTAGAAAAAGTGTTGTGGGATTAAGCTTGGATTATGAGATTCTGAACTTAACCAAGCACTTCTCATATCTGATATACAATGCTTCCCTCTTCTTTGTCCCTGCTGTTCAGAAGCAGTATTTTGAGAAGTATGGTCATGGCCAGATGATTCCTGTAGCTGCTAACGATGTTGCATTCTCCACTCATTCAGTCATAGTACATCTAATTATATTGTCCCAAATTGCAATGTTTGAACGTGGAAGTCAGAAGTTCTCCAAGTATGCCATTGCAATAGTTGTTGTGGTGTGGTTTAGTGCTGCTATTTGTTTTTTCATAGCATTGCCTAGCCAATCTTGGCTTTGGCTAATCTCCATCTTCAACATAATTCAAGTAGTTATGACCCTCATCAAATATTTTCCCCAGGCATTCATGAACTTCTTGAGAAAGAGTACAGATGGATTTAGCATTGGCACTATTCTTCTTGATTTTTCTGGAGGGATCTTTAACTATTCACAAATGGTTGTGCAGTCCATAGATCAAGGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTGGTAACCATATTCTATGATTCTATTTTAATGTGCCAACATTATGTACTATACCCTGAGAACAAGAAAGGGCTTACTTCTAAAAATTCCGAAGAAATCAAGCAGCCACTAATCAGTGCAAGTCCAATAGATCAACAAATCAAAGGTTCACTTAAATCTTCACATCAGTCTCCGGCAGAATTATGA
Predicted protein sequences of Glyma19g07740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g07740.1 sequence type=predicted peptide gene model=Glyma19g07740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVPWNSFPLEVIYQVLGWLAFLSWSVAGYPQLILNFRRKSVVGLSLDYEILNLTKHFSYLIYNASLFFVPAVQKQYFEKYGHGQMIPVAANDVAFSTHSVIVHLIILSQIAMFERGSQKFSKYAIAIVVVVWFSAAICFFIALPSQSWLWLISIFNIIQVVMTLIKYFPQAFMNFLRKSTDGFSIGTILLDFSGGIFNYSQMVVQSIDQGSWVNFYGNIGKVLISLVTIFYDSILMCQHYVLYPENKKGLTSKNSEEIKQPLISASPIDQQIKGSLKSSHQSPAEL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
