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Report for Sequence Feature Glyma19g07631

Feature Type:gene_model
Chromosome:Gm19
Start:9118017
stop:9119155
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g07631
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18590AT Annotation by Michelle Graham. TAIR10: early nodulin-like protein 5 | chr3:6398670-6399337 FORWARD LENGTH=188 SoyBaseE_val: 2.00E-46ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
PF02298PFAM Plastocyanin-like domain JGI ISS
UniRef100_B9SLS7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mavicyanin, putative n=1 Tax=Ricinus communis RepID=B9SLS7_RICCO SoyBaseE_val: 2.00E-60ISS
UniRef100_I1N6X5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N6X5_SOYBN SoyBaseE_val: 4.00E-83ISS

Expression Patterns of Glyma19g07631
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g07631 not represented in the dataset
Glyma19g07631 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g07631 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g054600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g07631
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g07631
>Glyma19g07631.1   sequence type=CDS   gene model=Glyma19g07631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTTGTTCCGGTTCACTACTAGTGCTTCCCTTTGTCATTTCCTCGACTCTTCTATGTTTCTCTGTGGCTTCCAATGAGTTCGAAGTTGGTGGCTCAAAAGGGTGGATTGTTCCACCTGCTAACGACACCAACTTCTTCAATGATTGGGCTTCCCAAAACAGGTTTCAGGCTGGTGACACCATTCGGTTTAAGTACAAGAAGGACTCTGTGATGGAGGTGGGAGAGGGAGATTACACACACTGCAACGCCACACACCCCACACTCTTCTCCAACAATGGCAACACTGTGTTCAAGCTTAACCACTCAGGGACCTTCTACTTCATCAGTGGTGCATCAGGGCACTGTGAGAAGGGTCAGAAGATGATTGTGAGGGTCATGGCTGATGAGTCTCTTTCTCAGCATGCCAAGTCTTCTGGTCACCATGTTCCAGTTTCGCCAATTGGGGTCTCTCAAATGCTCTACCTTCAGTTTGTTTTGACATGTGTTGCTTCTTATGTAGTTTGA
Predicted protein sequences of Glyma19g07631
>Glyma19g07631.1   sequence type=predicted peptide   gene model=Glyma19g07631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSCSGSLLVLPFVISSTLLCFSVASNEFEVGGSKGWIVPPANDTNFFNDWASQNRFQAGDTIRFKYKKDSVMEVGEGDYTHCNATHPTLFSNNGNTVFKLNHSGTFYFISGASGHCEKGQKMIVRVMADESLSQHAKSSGHHVPVSPIGVSQMLYLQFVLTCVASYVV*






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