Report for Sequence Feature Glyma19g07490
Feature Type: gene_model
Chromosome: Gm19
Start: 8859652
stop: 8863031
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g07490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G27400 AT
Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:10140323-10143023 FORWARD LENGTH=412
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0030570 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity
SoyBase N/A ISS
PF00544 PFAM
Pectate lyase
JGI ISS
UniRef100_G7KN73 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase n=1 Tax=Medicago truncatula RepID=G7KN73_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E4A7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E4A7 related cluster n=1 Tax=unknown RepID=UPI000233E4A7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g07490
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g07490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g053800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g07490
Coding sequences of Glyma19g07490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g07490.1 sequence type=CDS gene model=Glyma19g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCCCTTTCATGCATCATTGTTCTTTTTGCTCTTTCTCTTCTGACACCCTGTTTTGTTTCCTCCTCCGCAGTGAGAGACCCTGAGTTAGTAGTACAAGAAGTACAAAGAAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGCGGAACAGGCAACCCTATTGACGATTGCTGGCGTTGTGAATCCAACTGGGAGAACAACCGGCAAAGACTAGCTGATTGTGCAATTGGGTTTGGCAAGGACGCAATAGGAGGAAAAAATGGTCGAATCTATGTGGTCACCGACTCCGGCGACGACGATGCCGTGAACCCTAGGCCAGGAACCCTAAGGTACGCAGCCATACAAGACGAGCCATTGTGGATCATTTTCAAGAGGGACATGGTGATCACCCTAAAAGAAGAGCTTTTGGTGAATTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTAATGGGGGATGCATTACTATACACTATGTTAGTAACATTATTATCCATGGTATTCACATTCATGATTGCAAGCCCACGGGGAACACCAACATTAGAGACTCTCCACATCACTCTGGGTTTTGGACTCAATCGGACGGTGATGGTGTGTCCATCTTTAATTCGAAGCATATTTGGGTTGATCATTGCTCTTTGTCTAATTGTCGTGATGGTCTCATTGATGCCATTCATGGATCCACGGCCATCACCATCTCCAACAATTACATGACCCATCATGACAAGGTTATGCTTTTGGGACACAGTGATTCGTACACCCAAGACAAGGACATGCAGGTCACTATAGCATTCAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACACGGGTATTTCCATGTGGTGAACAACGACTACACCCACTGGGAAATGTATGCAATTGGTGGGAGTGCAAATCCTACCATCAACAGCCAAGGGAACAGGTTCCTTGCCCCAAACATCAGGTTCAGCAAAGAGGTAACCAAGCATGAGGATGCTCCACAGAGTGAGTGGATGGGGTGGAATTGGAGGTCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCCTCTTCCAGCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGCTCCATGACCACCACTGCTGGTGCACTTACCTGTAGAAAGGGCAACCGTTGCTGA
Predicted protein sequences of Glyma19g07490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g07490.1 sequence type=predicted peptide gene model=Glyma19g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPLSCIIVLFALSLLTPCFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCESNWENNRQRLADCAIGFGKDAIGGKNGRIYVVTDSGDDDAVNPRPGTLRYAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIANGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPHHSGFWTQSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPQSEWMGWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTTTAGALTCRKGNRC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
