Glyma19g07410 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g07410

Feature Type:	gene_model
Chromosome:	Gm19
Start:	8755326
stop:	8759787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g07410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40610	AT	Annotation by Michelle Graham. TAIR10: NAD-dependent glycerol-3-phosphate dehydrogenase family protein \| chr5:16265071-16267258 REVERSE LENGTH=400	SoyBase	E_val: 0	ISS
GO:0006072	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process	SoyBase	N/A	ISS
GO:0046167	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009331	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004367	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2711	KOG	Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase	JGI		ISS
PTHR11728	Panther	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	JGI		ISS
PF01210	PFAM	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	JGI		ISS
PF07479	PFAM	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	JGI		ISS
UniRef100_H6TBK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid glycerol-3-phosphate dehydrogenase n=1 Tax=Jatropha curcas RepID=H6TBK2_9ROSI	SoyBase	E_val: 0	ISS
UniRef100_I1N6W6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6W6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g07410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g07410

Paralog	Evidence	Comments
Glyma05g24070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g07410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g053500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g07410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g07410

Limit To All Plant Sequences

>Glyma19g07410.2   sequence type=transcript   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATTCCTATATGTAATGGAATGGTCTTGAGATATGATTAGTCTTCACACAGAGAAGTGAAACAAAATCTGGAACAGGTGTGCATGGATAGACTCAGGAAGTGGTCCCCACTAGAGCTGCAAGCAAAGACAGTGGAAACATAGAAGGGATCGCCAGATTTAACTTTGAAACATAGTTTCTCACGAAACTGGTGTGCCATCTCCGCCCCCCATCACCCTTTTCTTTCCCTTCTTATATTCACTCTCTTCCTCCTCTCTTCAGCCTCTATTCTTCTTCTTCTTCACTGCTCCAATTATTATTGCATTGCATTGCATTGCCTCACTTCTCTTTCTGTTGTTGTTTCTTCATGGCTCCAGCCTTGGAAGAAGGAGGAGAAAGAGAAACTAGTGTGGCACAGAACAACTCCTTGAACAGTGTTGTCAATGATGCCACACACAGATCCAAAGTCACTGTTATTGGAAGTGGCAACTGGGGCAGTGTTGCAGCTAAGCTCATTGCCTCCAATACCCTCAGGCTTAGCTCCTTCCACGATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGTGAAGGATTCCAACATGTTAGTGTTTGTGACTCCACATCAATTTATGGAAGGAATATGCAAAAGGCTTGTTGGGAAAATAAGGGAAGATGCTGAAGCTATTTCCCTTGTTAAAGGGATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGAGAAGTTGCTGAGAGATGGGTTCAGTTGTTTTATACACACTATTTCATTGTGACAGCTGTTCAGGATGTTGAAGGAGTCGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGGTTGTTTTGTATTTCTTTCTCTTTTGTTCATATTTCTAGGGAGAGGAAACGAAAATGTCTGATTTAGTTATATATTTCCTAATTTTC

>Glyma19g07410.3   sequence type=transcript   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATTCCTATATGTAATGGAATGGTCTTGAGATATGATTAGTCTTCACACAGAGAAGTGAAACAAAATCTGGAACAGGTGTGCATGGATAGACTCAGGAAGTGGTCCCCACTAGAGCTGCAAGCAAAGACAGTGGAAACATAGAAGGGATCGCCAGATTTAACTTTGAAACATAGTTTCTCACGAAACTGCCTTGGAAGAAGGAGGAGAAAGAGAAACTAGTGTGGCACAGAACAACTCCTTGAACAGTGTTGTCAATGATGCCACACACAGATCCAAAGTCACTGTTATTGGAAGTGGCAACTGGGGCAGTGTTGCAGCTAAGCTCATTGCCTCCAATACCCTCAGGCTTAGCTCCTTCCACGATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGTGAAGGATTCCAACATGTTAGTGTTTGTGACTCCACATCAATTTATGGAAGGAATATGCAAAAGGCTTGTTGGGAAAATAAGGGAAGATGCTGAAGCTATTTCCCTTGTTAAAGGGATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGAGAAGTTGCTGAGAGATGGGTTCAGTTGTTTTATACACACTATTTCATTGTGACAGCTGTTCAGGATGTTGAAGGAGTCGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGGTCTTTTGATGAGCTTGAAGCAGAAATGCTACAAGGCCAGAAATTGCAGGGTGTCTCAACTGCGAGTGAGGTTTATGAGGTTCTAAGCCATCGTGGGTGGCTAGAGTTGTTCCCTCTCTTCTCAACAGTGCATGAGATAAGCACTGGCCTACTTCCACCATCGGCCATAGTTGAATACAGTGAGAAGCTACCCAGGTCCTTCTAATTCAAAGCATATTTGTTGTATAAGAAAATATAAATTATAGTGACAGTATCAAGGATATACAAAATGCATGCTTTAGCTGTATCAACAGTGGAAAGCATTGGTGGCTAGGCTGCTTTTTCTTTCCAAAAGATCATGCCAACAAGGAGCTTGTTTCCATATGGTTGAGGTTCTCTGAAGGCCAAGGAAGTTGACTTTTTGTATGAAGTTCTTATCAAGTTGTATTATTCCACTGCAAACAATTAATACATGCAGCAAGCTTACATAGTTTACATATACAATAAAGTAGTAATTGAACTGTGTATTGATCCATATGTTTGATTTTTCCATTTTTCATAAGCTATTAATTGAGCTGTGTGTTTTATTCCCCAATTTGGATGAGGAAAATGCTTTAGGATTTAACACTACAGGTTGTATATGTTGAAGGACATTAGCTGGGATTATTTTTCCCATTTTTTCTCTTGACTTTCATTGTCCCTCTTTGCTCTCTATTAAAGTAGTGATCATATTAATTTTCTACA

Coding sequences of Glyma19g07410

Limit To All Plant Sequences

>Glyma19g07410.1   sequence type=CDS   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAGCCTTGGAAGAAGGAGGAGAAAGAGAAACTAGTGTGGCACAGAACAACTCCTTGAACAGTGTTGTCAATGATGCCACACACAGATCCAAAGTCACTGTTATTGGAAGTGGCAACTGGGGCAGTGTTGCAGCTAAGCTCATTGCCTCCAATACCCTCAGGCTTAGCTCCTTCCACGATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGTGAAGGATTCCAACATGTTAGTGTTTGTGACTCCACATCAATTTATGGAAGGAATATGCAAAAGGCTTGTTGGGAAAATAAGGGAAGATGCTGAAGCTATTTCCCTTGTTAAAGGGATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGAGAAGTTGCTGAGAGATGGGTTCAGTTGTTTTATACACACTATTTCATTGTGACAGCTGTTCAGGATGTTGAAGGAGTCGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGGTCTTTTGATGAGCTTGAAGCAGAAATGCTACAAGGCCAGAAATTGCAGGGTGTCTCAACTGCGAGTGAGGTTTATGAGGTTCTAAGCCATCGTGGGTGGCTAGAGTTGTTCCCTCTCTTCTCAACAGTGCATGAGATAAGCACTGGCCTACTTCCACCATCGGCCATAGTTGAATACAGTGAGAAGCTACCCAGGTCCTTCTAA

>Glyma19g07410.2   sequence type=CDS   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAGCCTTGGAAGAAGGAGGAGAAAGAGAAACTAGTGTGGCACAGAACAACTCCTTGAACAGTGTTGTCAATGATGCCACACACAGATCCAAAGTCACTGTTATTGGAAGTGGCAACTGGGGCAGTGTTGCAGCTAAGCTCATTGCCTCCAATACCCTCAGGCTTAGCTCCTTCCACGATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGTGAAGGATTCCAACATGTTAGTGTTTGTGACTCCACATCAATTTATGGAAGGAATATGCAAAAGGCTTGTTGGGAAAATAAGGGAAGATGCTGAAGCTATTTCCCTTGTTAAAGGGATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGAGAAGTTGCTGAGAGATGGGTTCAGTTGTTTTATACACACTATTTCATTGTGACAGCTGTTCAGGATGTTGAAGGAGTCGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGGTTGTTTTGTATTTCTTTCTCTTTTGTTCATATTTCTAGGGAGAGGAAACGAAAATGTCTGATTTAG

>Glyma19g07410.3   sequence type=CDS   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGTGAAGGATTCCAACATGTTAGTGTTTGTGACTCCACATCAATTTATGGAAGGAATATGCAAAAGGCTTGTTGGGAAAATAAGGGAAGATGCTGAAGCTATTTCCCTTGTTAAAGGGATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCTAGTCTCATTTCTCAGCAACTGGGAATCAACTGTTCTGTTTTAATGGGTGCCAACATAGCAAATGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACTGTTGGATACAGGCTCAATAGAGAAGTTGCTGAGAGATGGGTTCAGTTGTTTTATACACACTATTTCATTGTGACAGCTGTTCAGGATGTTGAAGGAGTCGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAGGTCTTTTGATGAGCTTGAAGCAGAAATGCTACAAGGCCAGAAATTGCAGGGTGTCTCAACTGCGAGTGAGGTTTATGAGGTTCTAAGCCATCGTGGGTGGCTAGAGTTGTTCCCTCTCTTCTCAACAGTGCATGAGATAAGCACTGGCCTACTTCCACCATCGGCCATAGTTGAATACAGTGAGAAGCTACCCAGGTCCTTCTAA

Predicted protein sequences of Glyma19g07410

Limit To All Plant Sequences

>Glyma19g07410.1   sequence type=predicted peptide   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPALEEGGERETSVAQNNSLNSVVNDATHRSKVTVIGSGNWGSVAAKLIASNTLRLSSFHDEVRMWVYEETLLSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLESAVKDSNMLVFVTPHQFMEGICKRLVGKIREDAEAISLVKGMEVKMEGPCMISSLISQQLGINCSVLMGANIANEIAVEKFSEATVGYRLNREVAERWVQLFYTHYFIVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRLGLREMKAFSKLLFPSVKDSTFFESCGVADLITTCLGGRNRKVAEAYARNGGKRSFDELEAEMLQGQKLQGVSTASEVYEVLSHRGWLELFPLFSTVHEISTGLLPPSAIVEYSEKLPRSF*

>Glyma19g07410.2   sequence type=predicted peptide   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPALEEGGERETSVAQNNSLNSVVNDATHRSKVTVIGSGNWGSVAAKLIASNTLRLSSFHDEVRMWVYEETLLSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLESAVKDSNMLVFVTPHQFMEGICKRLVGKIREDAEAISLVKGMEVKMEGPCMISSLISQQLGINCSVLMGANIANEIAVEKFSEATVGYRLNREVAERWVQLFYTHYFIVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRLGLREMKAFSKLLFPSVKDSTFFESCGVADLITTCLGGRNRKVAEAYARNGGKRLFCISFSFVHISRERKRKCLI*

>Glyma19g07410.3   sequence type=predicted peptide   gene model=Glyma19g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWVYEETLLSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLESAVKDSNMLVFVTPHQFMEGICKRLVGKIREDAEAISLVKGMEVKMEGPCMISSLISQQLGINCSVLMGANIANEIAVEKFSEATVGYRLNREVAERWVQLFYTHYFIVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRLGLREMKAFSKLLFPSVKDSTFFESCGVADLITTCLGGRNRKVAEAYARNGGKRSFDELEAEMLQGQKLQGVSTASEVYEVLSHRGWLELFPLFSTVHEISTGLLPPSAIVEYSEKLPRSF*

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