Glyma19g07360 - SoyBase

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Report for Sequence Feature Glyma19g07360

Feature Type:	gene_model
Chromosome:	Gm19
Start:	8713712
stop:	8717475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g07360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14390	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:4637551-4639575 REVERSE LENGTH=369	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1552	KOG	Predicted alpha/beta hydrolase	JGI		ISS
PTHR12277	Panther	UNCHARACTERIZED	JGI		ISS
PTHR12277:SF8	Panther	UNCHARACTERIZED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9SLT8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein bem46, putative n=1 Tax=Ricinus communis RepID=B9SLT8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K2L6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2L6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g07360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g07360

Paralog	Evidence	Comments
Glyma05g24080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g07360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g053300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g07360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g07360

Limit To All Plant Sequences

>Glyma19g07360.2   sequence type=CDS   gene model=Glyma19g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAATGACATCATCGATGGCTGCGAAGTTGGCGTTCTTCCCGCCTCACCCAGCATCGTACAAGGTGGTGAAGGACGAGGTGACGAGTCTTCTGCTCCTCAGTCCCTTCCCTCACCGCGAGAACGTGGAAATTCTGAAGCTTCCGACGCGGCGCGGCGCCGAGATAGTGAGCATGTACGTTCGCCACCCCATGGCAGCTTCCACTGTTCTCTACTCTCACGGCAACGCCACCGATCTTGGCCAGATGTACGAGCTCTTCATCCAGCTCAGCATCCACCTGCGCGTTAATCTCATCGGGTATGACTACTCTGGGTATGGCCAATCATCAGGGAAGCCAAGTGAGCAGAATACATACGCAGATATTGAAGCTGTGTATAAGTGTCTAGAAGAAAGCTATGGTACCAAGCAAGAGGATATAATCTTGTATGGCCAATCTGTTGGTAGTGGCCCTACTTTGGATCTTGCAGCTAGATTGCCTCAATTGAGAGCTGTTGTTCTGCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGAATATCGACAAGATTCCACTCGTTAATTGTCCTGTTCTCATAATTCATGGGACTTCAGATGAAGTTGTAGATTGCTCCCACGGAAAACAACTGTGGGAACTGTGTAAAGAGAAATATGAGCCACTATGGCTCAAAGGAGGTAACCATTGTGATTTAGAGCAATTTCCTGAGTATATCAGGCATCTTAAGAAGTTCATAGCTACTGTTGAGAAGTCTCCATCACAAAGATACAGCTTCAGAAGAAGCATGGAACAGTTTGAGCAGCCGCGAAAGAGCACCGATATATTTGAAGTTATTAGAAAGAGCACTGATCGCAGGGAAAAACCGCGGTTGATTACAGACAGGCCTGAAAAGCTGAAGAATTTGTCCAATAATGCTGATAAGTTGGAGAAACTGAGAGTAACTTTTGATCATATGGACAGGTCAAGGAGAAGTGTGGATTGTCTTGAGAAGTCTAGAAAAAGCATTGATCATCAACTTGAAAAGGCAAGGAAAAGTGTTGACAGGTTGGAAAGAATAAGGACCTGA

Predicted protein sequences of Glyma19g07360

Limit To All Plant Sequences

>Glyma19g07360.2   sequence type=predicted peptide   gene model=Glyma19g07360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGMTSSMAAKLAFFPPHPASYKVVKDEVTSLLLLSPFPHRENVEILKLPTRRGAEIVSMYVRHPMAASTVLYSHGNATDLGQMYELFIQLSIHLRVNLIGYDYSGYGQSSGKPSEQNTYADIEAVYKCLEESYGTKQEDIILYGQSVGSGPTLDLAARLPQLRAVVLHSPILSGLRVMYPVKRSYWFDIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLEQFPEYIRHLKKFIATVEKSPSQRYSFRRSMEQFEQPRKSTDIFEVIRKSTDRREKPRLITDRPEKLKNLSNNADKLEKLRVTFDHMDRSRRSVDCLEKSRKSIDHQLEKARKSVDRLERIRT*

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