Glyma19g07240 - SoyBase

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Report for Sequence Feature Glyma19g07240

Feature Type:	gene_model
Chromosome:	Gm19
Start:	8549866
stop:	8552726
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g07240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60390	AT	Annotation by Michelle Graham. TAIR10: GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0052	KOG	Translation elongation factor EF-1 alpha/Tu	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF57	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_Q3LUM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1-alpha n=1 Tax=Gossypium hirsutum RepID=Q3LUM5_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_UPI000189CFAC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189CFAC related cluster n=1 Tax=unknown RepID=UPI000189CFAC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g07240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g07240

Paralog	Evidence	Comments
Glyma05g24110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g07240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g052400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g07240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g07240

Limit To All Plant Sequences

>Glyma19g07240.4   sequence type=transcript   gene model=Glyma19g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACTCTGCTGCCTCGCTCTGTTTCTGTCTCTGTGTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGGTAACAGCCTCTGCTCTTGTCTCTTCCATTCGATCCATGCCTGTCTCTTCTTTACGATGATGTTTCTTCGGTGTATGTTTATTTATTTATTTATTTATGCTTTATGTTGTGAATGTTCGGTTGTTTTGTTTCGCTTTGCTTTTGTGGATTCTATTGGTTTTTGAATCAGTTAATCGGAAGAGATTTTCGAGTTGTTTTGTGTTTTGGAGGTGAATCTTTTTGTTGAGGTCGCAGATCTGTTGATTTTGTGTCATAAACGTGCGACTCTGTTTGATTTTTTACGAGGTTATGACGTTTTGGTTGTTTTATTATGGATCTGTTAAGGCAGAACCATGATTTATGTTTATGTTCGTTTACACGATTAAATTTTCTTGTAACACGATGAAGTTTTTTTAAACACGTTGAAGGAGTCTTGTTGATATGAATTTGTCGATTGTTTTTTTGTGGTTTTGTTCTCACGTTATCAAGCGTAATCTTTTACTATGTACGCGAACATATCTAGATCTAGCAGAGCTTTTTTTTTTTTTAATTCTTTGTGAAGCTTTTGAAATATGAAATTTGTTTTTCAAATTTTTTTTTAATTTATTGAAAACACTGTGGATACTGAATAAGGTTCTATGTATGATGCGAACCATGTTTGATATGTTTGTTTTTGTTGTTCCATATGGATTTTTCTGTTAGATTTCCATATGCTTTTGAGTTTGTTTTTGCTGTTACAGATTGATTTACTTTTTAGAATATTTCTCTTGGCTTTCACTGTTTTAGAAATTTTTTGTTATTGGTAACTATAAATGTGTGAATTTGGATTATACCTTTACCTTGTTATTTAGTTGTGTGATAATTTGGTTTATAGTTATTTTGAGTTCTGACTCGTGTTTCTTTGAATTGATTCCAGTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGCGAAAGAGGAATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAGTACTACTGCACAGTCATCGATGCCCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGTACCTCCCAGGCTGATTGTGCTGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACCCTTGGTGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGATGCCACTACCCCGAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAGATTCCATTTGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAAATCAATGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGCTTCCATTGCAGGATGTCTACAAAATTGGTGGTATTGGTACCGTGCCAGTGGGACGTGTTGAGACTGGTGTCGTGAAGCCCGGTATGGTGGTGACTTTTGGTCCCACTGGGCTGACAACTGAGGTTAAGTCTGTTGAGATGCACCATGAGGCTCTCACAGAGGCTCTTCCAGGTGACAATGTTGGCTTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACATCTCAAGTCATTATCATGAACCACCCTGGCCAGATTGGAAATGGATACGCACCGGTGCTTGATTGCCACACTTCTCACATTGCTGTCAAGTTTTCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTTTTGAAGAATGGTGATGCAGGTATGGTTAAGATGATTCCAACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTCGGAGTCATCAAGAGTGTTGAGAAGAAAGACCCCACCGGAGCCAAGGTCACCAAGGCCGCTGCCAAGAAGAAGTGATTGCATTTGGGCAATTTTGCTAGCACATGTGATCATCATCGTGGTTACTCCTTTATAGTAGTTTTATCCTTGCAGAGTCTTAGGTGTTTTGTTTAAGTTATATTTTTAAGTTTCTGCCGATTTCATGTAGCCGTAACTTTCAAAACTAGGTTCTTGATCGGCGGTGGTCAATTTTCATTGCTGTTTGTTTTTGATGAGTACTGTTTTTTGTTTTGATGGTAAGAAGAGTCTGAGATATTTCGAATTTCACAAGCAGCTATAGGGTTTTAGTCCATTTCCTTTGCTGCTGAGGGATGTTTTAAGTTGCATTTAATTTATAACGAAGTTTTATAAACTGTTTATGGTTTAAAGGCTATTATTCTTTAA

Coding sequences of Glyma19g07240

Limit To All Plant Sequences

>Glyma19g07240.3   sequence type=CDS   gene model=Glyma19g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGCGAAAGAGGAATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAGTACTACTGCACAGTCATCGATGCCCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGTACCTCCCAGGCTGATTGTGCTGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACCCTTGGTGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGATGCCACTACCCCGAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAGATTCCATTTGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAAATCAATGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGCTTCCATTGCAGGATGTCTACAAAATTGGTGGTATTGGTACCGTGCCAGTGGGACGTGTTGAGACTGGTGTCGTGAAGCCCGGTATGGTGGTGACTTTTGGTCCCACTGGGCTGACAACTGAGGTTAAGTCTGTTGAGATGCACCATGAGGCTCTCACAGAGGCTCTTCCAGGTGACAATGTTGGCTTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACATCTCAAGTCATTATCATGAACCACCCTGGCCAGATTGGAAATGGATACGCACCGGTGCTTGATTGCCACACTTCTCACATTGCTGTCAAGTTTTCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTTTTGAAGAATGGTGATGCAGGTATGGTTAAGATGATTCCAACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTCGGAGTCATCAAGAGTGTTGAGAAGAAAGACCCCACCGGAGCCAAGGTCACCAAGGCCGCTGCCAAGAAGAAGTGA

>Glyma19g07240.4   sequence type=CDS   gene model=Glyma19g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGCGAAAGAGGAATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAGTACTACTGCACAGTCATCGATGCCCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGTACCTCCCAGGCTGATTGTGCTGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACCCTTGGTGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGATGCCACTACCCCGAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAGATTCCATTTGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAAATCAATGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGCTTCCATTGCAGGATGTCTACAAAATTGGTGGTATTGGTACCGTGCCAGTGGGACGTGTTGAGACTGGTGTCGTGAAGCCCGGTATGGTGGTGACTTTTGGTCCCACTGGGCTGACAACTGAGGTTAAGTCTGTTGAGATGCACCATGAGGCTCTCACAGAGGCTCTTCCAGGTGACAATGTTGGCTTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACATCTCAAGTCATTATCATGAACCACCCTGGCCAGATTGGAAATGGATACGCACCGGTGCTTGATTGCCACACTTCTCACATTGCTGTCAAGTTTTCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTTTTGAAGAATGGTGATGCAGGTATGGTTAAGATGATTCCAACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTCGGAGTCATCAAGAGTGTTGAGAAGAAAGACCCCACCGGAGCCAAGGTCACCAAGGCCGCTGCCAAGAAGAAGTGA

Predicted protein sequences of Glyma19g07240

Limit To All Plant Sequences

>Glyma19g07240.3   sequence type=predicted peptide   gene model=Glyma19g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK*

>Glyma19g07240.4   sequence type=predicted peptide   gene model=Glyma19g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK*

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