Glyma19g07220 - SoyBase

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Report for Sequence Feature Glyma19g07220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	8532317
stop:	8537365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g07220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56510	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:20944348-20946235 REVERSE LENGTH=257	SoyBase	E_val: 1.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0017025	GO-mf	Annotation by Michelle Graham. GO Molecular Function: TBP-class protein binding	SoyBase	N/A	ISS
KOG3152	KOG	TBP-binding protein, activator of basal transcription (contains rrm motif)	JGI		ISS
PTHR12311	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12311:SF2	Panther	TATA-BINDING PROTEIN-BINDING PROTEIN	JGI		ISS
UniRef100_C6TML1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TML1_SOYBN	SoyBase	E_val: 1.00E-178	ISS
UniRef100_G7KN58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-rRNA-processing protein esf2 n=1 Tax=Medicago truncatula RepID=G7KN58_MEDTR	SoyBase	E_val: 4.00E-110	ISS

Expression Patterns of Glyma19g07220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g07220

Paralog	Evidence	Comments
Glyma05g24130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g07220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g052200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g07220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g07220

Limit To All Plant Sequences

>Glyma19g07220.2   sequence type=transcript   gene model=Glyma19g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAACTGAACGACAACATTACAAAACCCCTATCTATAAATAAAAAATTGAAGTGAGATTCGACCCTTTTTCAGCTTTCACACGAAGAAGAAGCTGTAAAGAAACGATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAATTCATGTATTGATACTTTCACATCAGGAGCCAAAAATCACATTATATTTTCTGTGTCCTTGGTTCCCATAGGCAGGGTGAATCAGTGAAGCTTCTCTGGATGTATTTATTGTAGCGATTTTTCTAGAAAATATTTTTTTTTGTTGATCTAGGTTTTCAAAAGAAAATGCAATCTTCTTATACGTAAAAAACAAGCAATGAAGTTAACCGGAGTTGAAATTTGTGAGTTTGACAGGACTTGGTTATAAATGTCTTTTTGCTTGCACTACAAAATACAAATTTTCCGATTATGAATTCTA

Coding sequences of Glyma19g07220

Limit To All Plant Sequences

>Glyma19g07220.1   sequence type=CDS   gene model=Glyma19g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGCAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA

>Glyma19g07220.2   sequence type=CDS   gene model=Glyma19g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA

Predicted protein sequences of Glyma19g07220

Limit To All Plant Sequences

>Glyma19g07220.1   sequence type=predicted peptide   gene model=Glyma19g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKQKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*

>Glyma19g07220.2   sequence type=predicted peptide   gene model=Glyma19g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*

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