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Report for Sequence Feature Glyma19g06460

Feature Type:gene_model
Chromosome:Gm19
Start:7403619
stop:7405686
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02450AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L36e family protein | chr5:533501-534394 FORWARD LENGTH=108 SoyBaseE_val: 4.00E-53ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3452 KOG 60S ribosomal protein L36 JGI ISS
PTHR10114Panther 60S RIBOSOMAL PROTEIN L36E JGI ISS
PF01158PFAM Ribosomal protein L36e JGI ISS
UniRef100_I1N6R2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L36 n=1 Tax=Glycine max RepID=I1N6R2_SOYBN SoyBaseE_val: 1.00E-75ISS
UniRef100_I1N6R2UniRef Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L36 n=1 Tax=Glycine max RepID=I1N6R2_SOYBN SoyBaseE_val: 1.00E-75ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06460 not represented in the dataset

Glyma19g06460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g047300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g06460.2   sequence type=transcript   gene model=Glyma19g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTCAGATATTACCGAGAGTGGATCCACAAGGCCCAACTTTAGCCTCTCATATAAAACCCGAAGCAGGTTCGGGAAGAACCCTAGTTTCTGTTCTCCCTCTTTCACCGCAGTGTTAGGGTTTCTGTAGCCTCCAACCAGAAAGAGAGGGAAATGGCTCCCAAACATCCTAGTACGGGTTTGTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCCGGCTTTGCACCTTATGAAAAGCGAATAACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAGTTTCACTAGACTGTTTCGATGTACGAGTTGTCTTATTTTTGTTTTAGTTCAAGATTTTGCTTTGAGAAATATGTTTTACCTAATCGAGACATGATTTACTGAAAAAGTACAATTGGCTTATTTTCGACATGCATTCCAAATTGATGTTTTATTGTTACATATTGAAAAATGTTGTAAGCCTGTCTGAGGAGGTTTATCATATATTCATTTGTGTATATTTTTGAAAATGCAAATTCAA

>Glyma19g06460.1   sequence type=CDS   gene model=Glyma19g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCAAACATCCTAGTACGGGTTTGTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCCGGCTTTGCACCTTATGAAAAGCGAATAACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGGTTGCTCTATGTTCTTTTTTCAATATTATGCGTACCCTATAATTAA

>Glyma19g06460.2   sequence type=CDS   gene model=Glyma19g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCAAACATCCTAGTACGGGTTTGTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCCGGCTTTGCACCTTATGAAAAGCGAATAACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAA

>Glyma19g06460.1   sequence type=predicted peptide   gene model=Glyma19g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKHPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRLLYVLFSILCVPYN*

>Glyma19g06460.2   sequence type=predicted peptide   gene model=Glyma19g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKHPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK*







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