SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g06455): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g06455): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g06455

Feature Type:gene_model
Chromosome:Gm19
Start:7383837
stop:7386095
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19260AT Annotation by Michelle Graham. TAIR10: TTF-type zinc finger protein with HAT dimerisation domain | chr1:6657260-6659569 REVERSE LENGTH=769 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR11697Panther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN JGI ISS
PTHR11697:SF9Panther TRANSPOSASE-LIKE PROTEIN JGI ISS
PF05699PFAM hAT family dimerisation domain JGI ISS
UniRef100_G7K6B6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger MYM-type protein n=1 Tax=Medicago truncatula RepID=G7K6B6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L8Y3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8Y3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06455 not represented in the dataset

Glyma19g06455 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g047200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g06455.1   sequence type=CDS   gene model=Glyma19g06455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGATTTTTGAATAGGAAATTACGATCAAATGAGCAACAATCTTCATCAAAATCTTGTGAATCAACATATCATCCTAATGATCGAGATAAGATACGGAGAGCATATTTACAAAGAGGACCATGCCAACCTACTCTACATAATTTTCCCCAAAGAAATATTGGAAACTCTTTAAGAAGATTTTGTCCTTCTTGGTTTAATGAATTTGGCAACTGGTTGGAGTATAGCATAGAAAAAGATGCTGCATTTTGCTTGTGTTGTTATCTTTTTAGGCATGATTTTGGAAAGCAATCAGGTGGTGATACATTTGTGATAGAGGGATTCACAAATTGGAATAAGAAAGAAAGACTTTCATCTCATGTTGGAGGTCCTAATAGTCCTCATAACATTGCTTGGAGGAAGTGTCAAGATTTAATGAATCAAAATCAACATATTGAAGTTGCTATATCTAAGCAATTTGAACAAGTTCGTGACTTGTATCGAAGGTGTTTGACAACGTCAATTGATTGTATTCATTTTCTATTAAAGCAAGGATTAGCTTTCCGTGGTGATGATGAATCAAACAATTCTGTTGACCAAGGTAATTTCCTGGAACTTCTTAAATTTCTTGCTGAACACAATGAATCAATAAATCATATTGTCTTGGAAAATGCTCCCGAAAATCATCAATTAATTGCTCCAAAAATCCAAAAAGATATTGTTAATGTTGTTGCATTGGAAACCACTAATGCTATTATTACTAATCTTGGAGATGAATTATTTGCTATCATTGTTGATGAAGCACGTGACATATCAAACAAGGAGCAAATGGCTATTGCTTTGCATTATGTTAACAAAAAAGGAAGTATTGTTGATATATCAAGAATTCGTGGACAAGGTTATGATGGTGCTAGCAACATGCAAGGGGAATTTTGTGGTCTCAAAAGTTTGATCTTAAAGGAGAATTCATCTGCTTTTTATGTACATTGTTTTGCTCATCAATTACAACTCACATTAGTTGCTATTGCAAAAAATCACATTCAAGTTGCCTCTCTTTTTAATTTGGCGTCCACTTTATTAAATGTTGTTGGGGGATTTTGCACACGACATGACATGCTTCGTGAAAAACAAATAAATTATGTTAGAGAGGCATTGGGAAAAGGAGAAATTCCTAGTGGACAAGGTTTGAATCAAGAAACTAGTCTTAAACGAGTTGTTGATACTCGTTGGGGTTCACATTATGCAACTTTGATCAATTTGATATTGATGTATTCTTCTATAATTGATGTTCTTGAAATTATAAAAGAAGATGAATCAAATGCAGATCAAAAAGCTGAAGCAAATGGTCTTTTACATTTGCTAGAGGATTTTGATTTTGCATTCACATTGCATTTGATGAAAAATGTCTTGGGTATTTCAAATGAATTGTCACAGGCATTGCAAAGGAAAGATCAAGACATCATCAATGCTATGAACTCAGTTAACTTCACAAAGCTACGGTTGCAAACTATGAGGGATAATGGATGGGAGTCTTTACTGCAGGAAGTAAATCCATTTTGTAATAAGCATTTCATTAACATTTCCAATATGGAAGATATTTTTTTTGCTTCTGAGGGGAGATCACGACGTGGAGGTAAAACTCAAGCTATCACAACTAAGCATCATTATCGTGTTGAATTATTTTATACTGTTGTGGACATGCAACTTCAGGAACTTAAAGATCGTTTTACAGAAACAAATACTCAGTTGCTTCTTTGCATGGATTGTTTGAATCCAACCAGTTTATTCTCTTCTTTTGATAAGGCAAGGCTAATTGAATTTGCAAAGTTTTATCCATATGAATTCTCTGCAATTAATTTAGTGATGCTTGATAATCAACTTGAGACTTACATCATTGATATGCGTAGCAATGTAGAATTTTCATCCTTGAAAGGAATAAAAAATCTTTCTGAGAAGTTGGTTGAAACTGAAAGATATATTGTTTATCCATTAGTTTACCTTGTTTTGAAGTTAGCAATGATTTTGCCCGTTGCCACAATAACTGTGGAAAGAGTCTTTTCTGCCATGAAAATTGTGAAAAATAGGTTGCGTAATCGGATGAGAGATGCATGA

>Glyma19g06455.1   sequence type=predicted peptide   gene model=Glyma19g06455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRFLNRKLRSNEQQSSSKSCESTYHPNDRDKIRRAYLQRGPCQPTLHNFPQRNIGNSLRRFCPSWFNEFGNWLEYSIEKDAAFCLCCYLFRHDFGKQSGGDTFVIEGFTNWNKKERLSSHVGGPNSPHNIAWRKCQDLMNQNQHIEVAISKQFEQVRDLYRRCLTTSIDCIHFLLKQGLAFRGDDESNNSVDQGNFLELLKFLAEHNESINHIVLENAPENHQLIAPKIQKDIVNVVALETTNAIITNLGDELFAIIVDEARDISNKEQMAIALHYVNKKGSIVDISRIRGQGYDGASNMQGEFCGLKSLILKENSSAFYVHCFAHQLQLTLVAIAKNHIQVASLFNLASTLLNVVGGFCTRHDMLREKQINYVREALGKGEIPSGQGLNQETSLKRVVDTRWGSHYATLINLILMYSSIIDVLEIIKEDESNADQKAEANGLLHLLEDFDFAFTLHLMKNVLGISNELSQALQRKDQDIINAMNSVNFTKLRLQTMRDNGWESLLQEVNPFCNKHFINISNMEDIFFASEGRSRRGGKTQAITTKHHYRVELFYTVVDMQLQELKDRFTETNTQLLLCMDCLNPTSLFSSFDKARLIEFAKFYPYEFSAINLVMLDNQLETYIIDMRSNVEFSSLKGIKNLSEKLVETERYIVYPLVYLVLKLAMILPVATITVERVFSAMKIVKNRLRNRMRDA*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo