SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16110 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5261171-5262668 REVERSE LENGTH=244 | SoyBase | E_val: 1.00E-49 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1N6R1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1N6R1_SOYBN | SoyBase | E_val: 4.00E-123 | ISS |
| UniRef100_Q9FPI4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g16110 n=2 Tax=Arabidopsis thaliana RepID=Q9FPI4_ARATH | SoyBase | E_val: 1.00E-47 | ISS |
|
Glyma19g06450 not represented in the dataset |
Glyma19g06450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g07620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g047100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g06450.1 sequence type=CDS gene model=Glyma19g06450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTGTTATGGTCTTCAGCAGAACGCCTTTGCAGCCTGTGAAGAGATGAGAGGCCCTGTGAATTTTGTTGAACAGAAGGAGCCTGTCATTTGCCCTAAGCCGCGCCGAGTTGGGGTTGTATCTAACATGCCTATGAGGCATTTGAGATGGCATTTCAATCCACAGGCTGAGGGTTCTGACTCAAAAGCTGGGGCAGAGCTATTAGAGATAATGTTTAAGAAGGAGAGCCATGGGGAGGAATTTTCAAATCAGGTAGCTTCATCTCCTCCATTTTTTTGTGGGTCTCCTCCGGGCCGAGCTGCAAATCCCTTAGTCCAGGATGCTCGTTTCGGAGATGAAAAGCTTTGTCCGACATTATTAATTTCATCGCCCTCAGGTTTACTATCTCCATCATCAGCGTCACGCAAAGGAGGGTGTGTTAGGATGAGTTTCGGACTTAAACCGGCTGCAGTTAGAGTAGATGGATTTGATTGCCTCAACAAGGATTGCCAGAATTCTAGGATCCCTGTTGTTGCTTAA
>Glyma19g06450.1 sequence type=predicted peptide gene model=Glyma19g06450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCYGLQQNAFAACEEMRGPVNFVEQKEPVICPKPRRVGVVSNMPMRHLRWHFNPQAEGSDSKAGAELLEIMFKKESHGEEFSNQVASSPPFFCGSPPGRAANPLVQDARFGDEKLCPTLLISSPSGLLSPSSASRKGGCVRMSFGLKPAAVRVDGFDCLNKDCQNSRIPVVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
