SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g06335

Feature Type:gene_model
Chromosome:Gm19
Start:7193600
stop:7195104
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g06335
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G42170AT Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696 SoyBaseE_val: 9.00E-20ISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR10775Panther AC-LIKE TRANSPOSASE-RELATED JGI ISS
PTHR10775:SF11Panther AC-LIKE TRANSPOSASE JGI ISS
PF05699PFAM hAT family dimerisation domain JGI ISS
UniRef100_Q7XE06UniRef Annotation by Michelle Graham. Best UniRef hit: HAT family dimerisation domain containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XE06_ORYSJ SoyBaseE_val: 1.00E-31ISS
UniRef100_Q7XE06UniRef Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerisation domain containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XE06_ORYSJ SoyBaseE_val: 1.00E-31ISS

Expression Patterns of Glyma19g06335
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06335 not represented in the dataset
Glyma19g06335 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g06335 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g046500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g06335
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g06335
>Glyma19g06335.1   sequence type=CDS   gene model=Glyma19g06335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAAAAGGTAGGCTAAAGTCTTTCTTTAAGGTTGAATGTGCTAAGGTAGCCCTCACCACAAAATGCTGGACTTCTATTCAGAATTTGGATTACTTGACACTAACATATCACTTTATAGATACTGAATGGAAATTTGTACGATCTTCACCCCAAAGGTCTGCCAAATTTAAAGAATGGATAGAGTTTTTAGGTATATCGTGGAAAAAATTGTTGTGTCTTGATGTTTCAACAAGGTGGAACTCCTCCTATTTGAAGCTAGACGCTGCTAAGAAGTATCAAGAGGCCTTTGAGAAGATTCGCAAGTATGAGAAGTATTGGGGTGATATTGATAAGGTGAATAACTTTTTGTATTTTGGTGTGATGTTTGACCCCGATTTCAAGCATGAGATTTTGATGTGGTCTTTTGTAACCTTGTTTAAGTATAACAACATCTTTACTGAAAAATTATGCACTTCTATAAGAAAAAATTGTAAAAAGGCCTATAAGGAACAAACTAAATCCGAACAGTCTTCTCATGGTCTAGGAAACTTTGCTTCTGCAGCTAAAACAAGTGTCTGTGCTGAAACTTCATCATACTTGGCTAGGACTAATGCATTTAAGAGGCATTTAGCAGAGAAAGATTCCATTGATATACAAAATGAGTTTGAGAGGTATTTGGCTGAAAAATGTGTAGATGTTGATGATAGTTTTGATGTTCTTGTTTGGTGGAAACAAAATGCCTCAAGGTTTCCTACACTTTCAAGAATGGTTAAAGATATTTTGGCCACTCCTATTTCAATAGTTGCTTCTGAGAGTGATTTTAGCATTGGGGGTAGGGTTATAGATTGTTTTCGAAGCTCTCTAAATCCTCAAATGGAAGAGGCACTAATTTTTGCACAAAATTGGTTGAGGCCAATTTTAGCCCAATTGAAAGGACTCAAAATTATTGAAGACATTGAAATTTCAGAGGCTCAATAG
Predicted protein sequences of Glyma19g06335
>Glyma19g06335.1   sequence type=predicted peptide   gene model=Glyma19g06335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEKGRLKSFFKVECAKVALTTKCWTSIQNLDYLTLTYHFIDTEWKFVRSSPQRSAKFKEWIEFLGISWKKLLCLDVSTRWNSSYLKLDAAKKYQEAFEKIRKYEKYWGDIDKVNNFLYFGVMFDPDFKHEILMWSFVTLFKYNNIFTEKLCTSIRKNCKKAYKEQTKSEQSSHGLGNFASAAKTSVCAETSSYLARTNAFKRHLAEKDSIDIQNEFERYLAEKCVDVDDSFDVLVWWKQNASRFPTLSRMVKDILATPISIVASESDFSIGGRVIDCFRSSLNPQMEEALIFAQNWLRPILAQLKGLKIIEDIEISEAQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo