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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g06280

Feature Type:gene_model
Chromosome:Gm19
Start:7146630
stop:7148631
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02550AT Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263 SoyBaseE_val: 1.00E-109ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_G7KMR0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KMR0_MEDTR SoyBaseE_val: 4.00E-114ISS
UniRef100_I1N6Q1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Q1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06280 not represented in the dataset

Glyma19g06280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g07590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g046300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g06280.1   sequence type=CDS   gene model=Glyma19g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAATGAGTTGTAACGGATGTCGTGTTCTGCGCAAAGGGTGTAGCGAAGATTGTAGTATAAGACCGTGTTTGCAATGGATCAAGAACCCGGAGTCACAAGCTAATGCAACTGTTTTTCTTGCCAAGTTCTATGGTCGTGCTGGCCTCATGAACCTCATCAACGCTGGTCCTGAAAGCCTTCGTCCTGCCATTTTTCGATCCTTGTTATACGAAGCATGTGGTCGAATTGTGAACCCAATTTATGGTTCGGTGGGTTTGCTATGGTCCGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAGCCATTTTGAAAGGCGAGCCGATCACGCCGATAACATCCGAAGCCGCGGCTAATGGGCGGGCCCCACCACTCAAGGCCTACGACATACGCCATGTGTCAAAAGACGAGAACTCGGCAAACGAAACTCCAAAGGCCAAGACCCGGTCCCGGTTCAACCGAACCGGTAGCACACTCATTAAACCAAAGGCTAGCAAGGGAACCCCAACTGGGTTCGTTCCGATTGAACCGGTTGAACCGGAGACAGCAAACCGGACCACAAGCCACGAGTCGGGGCTGAGCCACTTGTCGGAAGCCGCCGTGATGGTGGAGGGAGAAAGCAAAGAAAGCGAAAGCGATGTGTCAGTGGAAACTTCGAATCTATTTCACGAAGAACCGGAGTCGGTTGCGAAGACGAGTGATCGAACCGGTGAAAGTGGTAATGAAATCGGCTTGGAATTGACGCTCGGGTTTGAACCGGTCTCACGTGTGCATCACGTGGTTCCAATGAAGAAGAGAAAGATAATTGCGTCGAAGAGTTATGGTGACTCGGCTGAGAAAGACTCGTGTAAGATGGAGCTGGGGCTTGAGTACCCGGCTTGA

>Glyma19g06280.1   sequence type=predicted peptide   gene model=Glyma19g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPESLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAILKGEPITPITSEAAANGRAPPLKAYDIRHVSKDENSANETPKAKTRSRFNRTGSTLIKPKASKGTPTGFVPIEPVEPETANRTTSHESGLSHLSEAAVMVEGESKESESDVSVETSNLFHEEPESVAKTSDRTGESGNEIGLELTLGFEPVSRVHHVVPMKKRKIIASKSYGDSAEKDSCKMELGLEYPA*







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