Glyma19g06200 - SoyBase

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Report for Sequence Feature Glyma19g06200

Feature Type:	gene_model
Chromosome:	Gm19
Start:	7051152
stop:	7053232
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g06200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38460	AT	Annotation by Michelle Graham. TAIR10: ALG6, ALG8 glycosyltransferase family \| chr5:15398592-15400987 REVERSE LENGTH=533	SoyBase	E_val: 3.00E-29	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
UniRef100_D7MJY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ALG6, ALG8 glycosyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJY5_ARALL	SoyBase	E_val: 1.00E-26	ISS
UniRef100_I1LX18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX18_SOYBN	SoyBase	E_val: 1.00E-51	ISS

Expression Patterns of Glyma19g06200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g06200

Paralog	Evidence	Comments
Glyma13g07560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g06200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g06200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g06200

Limit To All Plant Sequences

>Glyma19g06200.1   sequence type=CDS   gene model=Glyma19g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATTCTCTCTCCGCCACTCATTCTTAGATCTTCCACCTGGACTCCGTCGTTCTTTTCGCTTCCAGAGAATTGGAGGGTCACTTCAGTATTCTGCATAATAAGGGTTTGCGTTAAAGGTCAGCGTAGGTTACCTAGAAAACTACTCATGAGGTGGACAGTATTATCATCTGATTCCCTGATATTCTTTCCAGCTTCCCTGTACTTTATTATCCTTTATTACAATCAATCTTCAAGGAGCCGTAAAAGTGAATTAGCATGGCATACTGCTGTGCTATTGTTAAGCCCTTGTTTGAAAATTTTGTTGTTTTTGTTCAATGCCTTTGATTCTTTACATATTTTTCAGTCACAGGTTCGTACAACTGCATCAGCTTGGGCTTTACCATTGGCGCTGTTGCTGCTATCCTCTCCGGGAATGATCTTTATGGCTTCTGTTCTTTATTGTCTAGCTCTAAATCATAAACAGCAAGGGAATGGTAGCTATATGAATATTTTTCCAGATGAGTGCATATTTTGCACCTGCTTTTTTCAGCCATCTTCTTGGCAATGCCTGAGACATAAATATCCAATCCTTGAGGTGTCAAGACTGGGGTTGTTGGTTTTAGGAACATTTGCAGCTGTGTGGTGGCCTTATCTTTATTCAACACAATCCATTTTGGAGGTACAATGTTGTCATTGCCTGCTACATAGTGCATTTTTATTCTTAACTTCTCATTTGTTTTATAGTATTATTCTTATGTGGAAGCTGTTTATATTACCTTTACTG

Predicted protein sequences of Glyma19g06200

Limit To All Plant Sequences

>Glyma19g06200.1   sequence type=predicted peptide   gene model=Glyma19g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VILSPPLILRSSTWTPSFFSLPENWRVTSVFCIIRVCVKGQRRLPRKLLMRWTVLSSDSLIFFPASLYFIILYYNQSSRSRKSELAWHTAVLLLSPCLKILLFLFNAFDSLHIFQSQVRTTASAWALPLALLLLSSPGMIFMASVLYCLALNHKQQGNGSYMNIFPDECIFCTCFFQPSSWQCLRHKYPILEVSRLGLLVLGTFAAVWWPYLYSTQSILEVQCCHCLLHSAFLFLTSHLFYSIILMWKLFILPLL

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