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Report for Sequence Feature Glyma19g06190

Feature Type:gene_model
Chromosome:Gm19
Start:7032580
stop:7036829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16060AT Annotation by Michelle Graham. TAIR10: Cytochrome c oxidase biogenesis protein Cmc1-like | chr5:5246161-5247209 FORWARD LENGTH=95 SoyBaseE_val: 1.00E-31ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4624 KOG Uncharacterized conserved protein JGI ISS
PF08583PFAM Cytochrome c oxidase biogenesis protein Cmc1 like JGI ISS
UniRef100_I1N6Q0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6Q0_SOYBN SoyBaseE_val: 5.00E-42ISS
UniRef100_Q01G25UniRef Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 01 n=1 Tax=Ostreococcus tauri RepID=Q01G25_OSTTA SoyBaseE_val: 5.00E-06ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06190 not represented in the dataset

Glyma19g06190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g046200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g06190.2   sequence type=transcript   gene model=Glyma19g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTCATTTTATACTGAAAAATCAGTGTTTTCGACCCTGCAAGTCTGCAACCGAGTTTTATTCAGAAATAATCTCAATCTCATTCTCGAACCTCCATGGGTTACATTCAAGACGCACGCCAGAATCACGTTAAGAAGAAAGTTGAAGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGCTGAAAGAGTGTGATCATTACACGGCAAAGTATGCTGAATGTGCTTTAGGGAGAACACTTTCAGTTGTGTGGCGCTGTCGCCAACAAGCACAAGAGTTGAATGATTGTCTTCACCAATTGCCCTCATGTTTTGGGGTAGAGAGCGGAGGAACTGAGAACTCCATATCCTTTTTGTGTCATATGTCTCTGACCAAGCACCAATGATTCTGTTTTGGAGGAAATGAAGAAAGAATACATGTTAAAACAAGGAGAGGGCTCTACTAGAATCCAGACTGCTTGATTTCAATGACAATGTGTACGCAAGGAACAGTTTATCAATATAATCTGATGCATCTTGCATTCAAGTTCTCTAGATATTTACAATGATCTCTTCATTATTGTGATGTCATGGAGCTTCATTATAACTTAAACTTTGTTTGGGAGTTTTGTATGGACAATAGAACATTAATGAAAAGATCTTCTTTGTTTGTATGTTGTTTGTTACATGATCTTAAAGTAGTGTCAGATTGAAGCCATTTTGACTTAAGGCTGTGTTTGAGAAAGTGAGTTACTCGGATGCCAATCCACCATGAGAAAAGGATTGGCAGTTGAACGAGCTTTGTAAACTGAGAATGCTGCAAAACAACACACTCTAAAGGTGATGTGTGTGAAGAGATTAACTATGATGGTGTTATCGGAGTTTGAACATATGCTATGCAGT

>Glyma19g06190.1   sequence type=CDS   gene model=Glyma19g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACATTCAAGACGCACGCCAGAATCACGTTAAGAAGAAAGTTGAAGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGCTGAAAGAGTGTGATCATTACACGGCAAAGTATGCTGAATGTGCTTTAGGGAGAACACTTTCAGTTGTGTGGCGCTGTCGCCAACAAGCACAAGAGTTGAATGATTGTCTTCACCAATTCACCAATGATTCTGTTTTGGAGGAAATGAAGAAAGAATACATGTTAAAACAAGGAGAGGGCTCTACTAGAATCCAGACTGCTTGA

>Glyma19g06190.2   sequence type=CDS   gene model=Glyma19g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACATTCAAGACGCACGCCAGAATCACGTTAAGAAGAAAGTTGAAGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGCTGAAAGAGTGTGATCATTACACGGCAAAGTATGCTGAATGTGCTTTAGGGAGAACACTTTCAGTTGTGTGGCGCTGTCGCCAACAAGCACAAGAGTTGAATGATTGTCTTCACCAATTGCCCTCATGTTTTGGGGTAGAGAGCGGAGGAACTGAGAACTCCATATCCTTTTTGTGTCATATGTCTCTGACCAAGCACCAATGA

>Glyma19g06190.1   sequence type=predicted peptide   gene model=Glyma19g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYIQDARQNHVKKKVEEALRSKMKQKALKECDHYTAKYAECALGRTLSVVWRCRQQAQELNDCLHQFTNDSVLEEMKKEYMLKQGEGSTRIQTA*

>Glyma19g06190.2   sequence type=predicted peptide   gene model=Glyma19g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYIQDARQNHVKKKVEEALRSKMKQKALKECDHYTAKYAECALGRTLSVVWRCRQQAQELNDCLHQLPSCFGVESGGTENSISFLCHMSLTKHQ*







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