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Report for Sequence Feature Glyma19g06160

Feature Type:gene_model
Chromosome:Gm19
Start:6954890
stop:6960761
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49190AT Annotation by Michelle Graham. TAIR10: O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522 SoyBaseE_val: 5.00E-58ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004144GO-mf Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity SoyBaseN/AISS
PF03007PFAM Uncharacterised protein family (UPF0089) JGI ISS
PF06974PFAM Protein of unknown function (DUF1298) JGI ISS
UniRef100_C6T8C1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8C1_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7KZX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase WSD1 n=1 Tax=Medicago truncatula RepID=G7KZX1_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g06160 not represented in the dataset

Glyma19g06160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g07550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g046000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g06160.1   sequence type=CDS   gene model=Glyma19g06160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGATTTCATGAGGAAGAAATTGAAGAGCCAGTGAGTCCAACAGGGCAATACTTGACAAGCTCTTCACTAAGTGTGTACATTCTTGGTGTCTTGGAAAGTGAGGTTCCCATTGATGACTCTCAAACCGTGCCACTTCTTCAGAATCTCTTCCTTCCCATCAACTCACGTTTCTCCTCCATCATGATTAGGGACAAAAATGGGGAGAAGAAGTGGAAGAAAGTTGAAGTTAAGCTGGAGGACCATATCAAAGTTCCTACATTTCCCAATGGCAAGTCATCCAACTTGTTCTTATATGATGAATACCTTGATGAGTACATGTCCACAATAGCTGTGGAACATTTACCACAAAATAGGCCACTATGGGAACTTCACATTATAAAATACCCAACAAGCAATGCTAAGGGTACCTTGGTGTTCAAACTCCACCATGCCCTTGGGGATGGTTTTTCTCTCATGGGTGCCCTTCTTTCATGCATGCAAAGAGCTGACAACACCTCTCTTCCCTTCACACTCCCATCAAGCCAAAGGCCCAAAGCATCATCAATTTCCAACACCAAAGGGTTTTTCAAGAAATTGCCCTCCATTTTCTTCCAAACTATATCCGAATTTGGATGGAGTTTCTTGAAAAGTAAGTTGATTGAAGATGATCAAACACCAATAAGGTCTTGTGCGGAAGACTTCAAGACTCGCCAAATGACCATCTCAGATGTCACCTTCTCATTGGATCTTATCAAAGACGTGAAATCCAAACTTGGAGTGAGCATAAATGATGTGCTTGCTGGAGTAATTTTTTTTGGCATTCGGCTATACATGCAAGAAATTAATCTGAAATCAAGCCAAACCCAATCCACAGCATTGGTGTTGCTGAACACAAGAAACATTGAAGGTTACAAGTCTGTTAAGGAGATGATTGAGAAGACCAATAGTCGTTCTGCATGGGGGAATCAATATGCCTTTTTGCATGTTTCAATTCCAGAGCTTAGTGACTCCAAATATGCAAACCCACTTGAGTTTATAAGGGAAGCCCATAAGGATATGACCAAAAAGAAAAATTCTTTGGCCACTCCTCTCACTGGCATGCTTCTAGATATGCTCAGAAAACTCAGAGGTCCTGAGGCTGCAGCTAGCTACTTACGCAGTACTTTGAGAAACTCAAGCACAACAATCTCAAACATCATTGGACCAGTGGAGCAAATGGCTGTGGCTAATCATCCAATTAAAGGGTTTTACTTCATGGTAGCTGGTTCACCTGAGAGTCTCACCATGACGATCATGAGCTACATGGGAAAGATAAGAATTGCATTTGGAGTAGAGAAGAACTTCATCGACAAGCAATTATTCAAGTCGTGTTTGGAGAATTCTCTTGAGATGATAAAGGAAGCAGCAAAAAAGATTTCCGCATAA

>Glyma19g06160.1   sequence type=predicted peptide   gene model=Glyma19g06160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERFHEEEIEEPVSPTGQYLTSSSLSVYILGVLESEVPIDDSQTVPLLQNLFLPINSRFSSIMIRDKNGEKKWKKVEVKLEDHIKVPTFPNGKSSNLFLYDEYLDEYMSTIAVEHLPQNRPLWELHIIKYPTSNAKGTLVFKLHHALGDGFSLMGALLSCMQRADNTSLPFTLPSSQRPKASSISNTKGFFKKLPSIFFQTISEFGWSFLKSKLIEDDQTPIRSCAEDFKTRQMTISDVTFSLDLIKDVKSKLGVSINDVLAGVIFFGIRLYMQEINLKSSQTQSTALVLLNTRNIEGYKSVKEMIEKTNSRSAWGNQYAFLHVSIPELSDSKYANPLEFIREAHKDMTKKKNSLATPLTGMLLDMLRKLRGPEAAASYLRSTLRNSSTTISNIIGPVEQMAVANHPIKGFYFMVAGSPESLTMTIMSYMGKIRIAFGVEKNFIDKQLFKSCLENSLEMIKEAAKKISA*







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