SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49190 | AT | Annotation by Michelle Graham. TAIR10: O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522 | SoyBase | E_val: 5.00E-58 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity | SoyBase | N/A | ISS |
| PF03007 | PFAM | Uncharacterised protein family (UPF0089) | JGI | ISS | |
| PF06974 | PFAM | Protein of unknown function (DUF1298) | JGI | ISS | |
| UniRef100_C6T8C1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8C1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7KZX1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase WSD1 n=1 Tax=Medicago truncatula RepID=G7KZX1_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma19g06160 not represented in the dataset |
Glyma19g06160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g07550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g046000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g06160.1 sequence type=CDS gene model=Glyma19g06160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGATTTCATGAGGAAGAAATTGAAGAGCCAGTGAGTCCAACAGGGCAATACTTGACAAGCTCTTCACTAAGTGTGTACATTCTTGGTGTCTTGGAAAGTGAGGTTCCCATTGATGACTCTCAAACCGTGCCACTTCTTCAGAATCTCTTCCTTCCCATCAACTCACGTTTCTCCTCCATCATGATTAGGGACAAAAATGGGGAGAAGAAGTGGAAGAAAGTTGAAGTTAAGCTGGAGGACCATATCAAAGTTCCTACATTTCCCAATGGCAAGTCATCCAACTTGTTCTTATATGATGAATACCTTGATGAGTACATGTCCACAATAGCTGTGGAACATTTACCACAAAATAGGCCACTATGGGAACTTCACATTATAAAATACCCAACAAGCAATGCTAAGGGTACCTTGGTGTTCAAACTCCACCATGCCCTTGGGGATGGTTTTTCTCTCATGGGTGCCCTTCTTTCATGCATGCAAAGAGCTGACAACACCTCTCTTCCCTTCACACTCCCATCAAGCCAAAGGCCCAAAGCATCATCAATTTCCAACACCAAAGGGTTTTTCAAGAAATTGCCCTCCATTTTCTTCCAAACTATATCCGAATTTGGATGGAGTTTCTTGAAAAGTAAGTTGATTGAAGATGATCAAACACCAATAAGGTCTTGTGCGGAAGACTTCAAGACTCGCCAAATGACCATCTCAGATGTCACCTTCTCATTGGATCTTATCAAAGACGTGAAATCCAAACTTGGAGTGAGCATAAATGATGTGCTTGCTGGAGTAATTTTTTTTGGCATTCGGCTATACATGCAAGAAATTAATCTGAAATCAAGCCAAACCCAATCCACAGCATTGGTGTTGCTGAACACAAGAAACATTGAAGGTTACAAGTCTGTTAAGGAGATGATTGAGAAGACCAATAGTCGTTCTGCATGGGGGAATCAATATGCCTTTTTGCATGTTTCAATTCCAGAGCTTAGTGACTCCAAATATGCAAACCCACTTGAGTTTATAAGGGAAGCCCATAAGGATATGACCAAAAAGAAAAATTCTTTGGCCACTCCTCTCACTGGCATGCTTCTAGATATGCTCAGAAAACTCAGAGGTCCTGAGGCTGCAGCTAGCTACTTACGCAGTACTTTGAGAAACTCAAGCACAACAATCTCAAACATCATTGGACCAGTGGAGCAAATGGCTGTGGCTAATCATCCAATTAAAGGGTTTTACTTCATGGTAGCTGGTTCACCTGAGAGTCTCACCATGACGATCATGAGCTACATGGGAAAGATAAGAATTGCATTTGGAGTAGAGAAGAACTTCATCGACAAGCAATTATTCAAGTCGTGTTTGGAGAATTCTCTTGAGATGATAAAGGAAGCAGCAAAAAAGATTTCCGCATAA
>Glyma19g06160.1 sequence type=predicted peptide gene model=Glyma19g06160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERFHEEEIEEPVSPTGQYLTSSSLSVYILGVLESEVPIDDSQTVPLLQNLFLPINSRFSSIMIRDKNGEKKWKKVEVKLEDHIKVPTFPNGKSSNLFLYDEYLDEYMSTIAVEHLPQNRPLWELHIIKYPTSNAKGTLVFKLHHALGDGFSLMGALLSCMQRADNTSLPFTLPSSQRPKASSISNTKGFFKKLPSIFFQTISEFGWSFLKSKLIEDDQTPIRSCAEDFKTRQMTISDVTFSLDLIKDVKSKLGVSINDVLAGVIFFGIRLYMQEINLKSSQTQSTALVLLNTRNIEGYKSVKEMIEKTNSRSAWGNQYAFLHVSIPELSDSKYANPLEFIREAHKDMTKKKNSLATPLTGMLLDMLRKLRGPEAAASYLRSTLRNSSTTISNIIGPVEQMAVANHPIKGFYFMVAGSPESLTMTIMSYMGKIRIAFGVEKNFIDKQLFKSCLENSLEMIKEAAKKISA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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