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Report for Sequence Feature Glyma19g05990

Feature Type:gene_model
Chromosome:Gm19
Start:6705877
stop:6706954
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32175AT Annotation by Michelle Graham. TAIR10: PNAS-3 related | chr4:15535555-15537537 FORWARD LENGTH=241 SoyBaseE_val: 8.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR21321Panther PNAS-3 RELATED JGI ISS
PTHR21321:SF1Panther PNAS-3 RELATED JGI ISS
UniRef100_B9RB31UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP40, putative n=1 Tax=Ricinus communis RepID=B9RB31_RICCO SoyBaseE_val: 1.00E-20ISS
UniRef100_I1N6N5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6N5_SOYBN SoyBaseE_val: 5.00E-47ISS

Expression Patterns of Glyma19g05990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05990 not represented in the dataset
Glyma19g05990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g05990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05990
>Glyma19g05990.1   sequence type=CDS   gene model=Glyma19g05990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCACCTGCAGATAGGTACTTTGATTTACGTGCAGGTGGTAAAAGCAAACCCTGGAATGAATCCAGAGCTGTCATGCACTGATGCCAGTGGAATAGCAGCAGAATTTGGTGGCCTAAAAGATGGCTATATGTTCCCATGTACAATGGGTCTCTCAAGGATGTATGTATGTATGTGGAATTCAAGTTTTGGTTGTAAGACTAAAATATTAAATTTGTGA
Predicted protein sequences of Glyma19g05990
>Glyma19g05990.1   sequence type=predicted peptide   gene model=Glyma19g05990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHLQIGTLIYVQVVKANPGMNPELSCTDASGIAAEFGGLKDGYMFPCTMGLSRMYVCMWNSSFGCKTKILNL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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