SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25780 | AT | Annotation by Michelle Graham. TAIR10: allene oxide cyclase 3 | chr3:9409362-9410409 FORWARD LENGTH=258 | SoyBase | E_val: 1.00E-84 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isomerase activity | SoyBase | N/A | ISS |
| GO:0046423 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: allene-oxide cyclase activity | SoyBase | N/A | ISS |
| PF06351 | PFAM | Allene oxide cyclase | JGI | ISS | |
| UniRef100_F6KBT3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Allene oxide cyclase 3 n=1 Tax=Glycine max RepID=F6KBT3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_F6KBT3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Allene oxide cyclase 3 n=1 Tax=Glycine max RepID=F6KBT3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05980 not represented in the dataset |
Glyma19g05980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g07490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g044900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05980.1 sequence type=CDS gene model=Glyma19g05980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCATCCTCATCAACCGTTGCTTTGAGAACCATCTCCTCTTTCTCTCTGAAACCTGCCACCACAACAAGATCATTACTCAACACTAGTACTTCATCCACCATAACCCTCTTACCCTTTACATCAGCAAACTCATTTCTCTCCAAAACCCTCAAACTCAACACCTCTTCCCCACACTCTCACCTTTCACTACCCCTCAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAAGCCCTGCTTATCTTAGATTGAGCCAGAAAACTGTCAATTCCCTTGGTGACCTAGTCCCCTTCAGCAACAAGTTGTACTCTGGATGTTTGCAAAAGAGGGTAGGGATAACAGCTGGAATTTGTGTGTTGATCCAAAACAAATCAGAGAAGAAGGGAGATATGTATGAGGCAATCTACAGCTTCTACTTTGGGGACTATGGTCACATTTCAGTGCAGGGTTCATACCTGACCTATGAAGACACTTATCTTGCTGTGACTGGTGGATCTGGCATCTTTGAAGGGGCTTATGGTCAAGTCAAGCTGCATCAAATTGTGTTCCCCTTTAAATTATTCTACACATTTTATCTTAAGGGCATCAAGGACTTGCCTCAGGAGCTTCTTTCCAAGCCTGTTGAGCCCAGCCCATCTGTTGAGCCTAGCCCATCTGCCAAGGCCTGTGAGCCACATGCTGTTATTGCTGGCTTCACTGACTAA
>Glyma19g05980.1 sequence type=predicted peptide gene model=Glyma19g05980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSSTVALRTISSFSLKPATTTRSLLNTSTSSTITLLPFTSANSFLSKTLKLNTSSPHSHLSLPLNKSFTCRSQAEPSSDSAKVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYSGCLQKRVGITAGICVLIQNKSEKKGDMYEAIYSFYFGDYGHISVQGSYLTYEDTYLAVTGGSGIFEGAYGQVKLHQIVFPFKLFYTFYLKGIKDLPQELLSKPVEPSPSVEPSPSAKACEPHAVIAGFTD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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