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Report for Sequence Feature Glyma19g05980

Feature Type:gene_model
Chromosome:Gm19
Start:6700249
stop:6702894
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25780AT Annotation by Michelle Graham. TAIR10: allene oxide cyclase 3 | chr3:9409362-9410409 FORWARD LENGTH=258 SoyBaseE_val: 1.00E-84ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052542GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016853GO-mf Annotation by Michelle Graham. GO Molecular Function: isomerase activity SoyBaseN/AISS
GO:0046423GO-mf Annotation by Michelle Graham. GO Molecular Function: allene-oxide cyclase activity SoyBaseN/AISS
PF06351PFAM Allene oxide cyclase JGI ISS
UniRef100_F6KBT3UniRef Annotation by Michelle Graham. Best UniRef hit: Allene oxide cyclase 3 n=1 Tax=Glycine max RepID=F6KBT3_SOYBN SoyBaseE_val: 0ISS
UniRef100_F6KBT3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Allene oxide cyclase 3 n=1 Tax=Glycine max RepID=F6KBT3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05980 not represented in the dataset

Glyma19g05980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g07490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g044900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g05980.1   sequence type=CDS   gene model=Glyma19g05980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCTCATCAACCGTTGCTTTGAGAACCATCTCCTCTTTCTCTCTGAAACCTGCCACCACAACAAGATCATTACTCAACACTAGTACTTCATCCACCATAACCCTCTTACCCTTTACATCAGCAAACTCATTTCTCTCCAAAACCCTCAAACTCAACACCTCTTCCCCACACTCTCACCTTTCACTACCCCTCAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAAGCCCTGCTTATCTTAGATTGAGCCAGAAAACTGTCAATTCCCTTGGTGACCTAGTCCCCTTCAGCAACAAGTTGTACTCTGGATGTTTGCAAAAGAGGGTAGGGATAACAGCTGGAATTTGTGTGTTGATCCAAAACAAATCAGAGAAGAAGGGAGATATGTATGAGGCAATCTACAGCTTCTACTTTGGGGACTATGGTCACATTTCAGTGCAGGGTTCATACCTGACCTATGAAGACACTTATCTTGCTGTGACTGGTGGATCTGGCATCTTTGAAGGGGCTTATGGTCAAGTCAAGCTGCATCAAATTGTGTTCCCCTTTAAATTATTCTACACATTTTATCTTAAGGGCATCAAGGACTTGCCTCAGGAGCTTCTTTCCAAGCCTGTTGAGCCCAGCCCATCTGTTGAGCCTAGCCCATCTGCCAAGGCCTGTGAGCCACATGCTGTTATTGCTGGCTTCACTGACTAA

>Glyma19g05980.1   sequence type=predicted peptide   gene model=Glyma19g05980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSTVALRTISSFSLKPATTTRSLLNTSTSSTITLLPFTSANSFLSKTLKLNTSSPHSHLSLPLNKSFTCRSQAEPSSDSAKVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYSGCLQKRVGITAGICVLIQNKSEKKGDMYEAIYSFYFGDYGHISVQGSYLTYEDTYLAVTGGSGIFEGAYGQVKLHQIVFPFKLFYTFYLKGIKDLPQELLSKPVEPSPSVEPSPSAKACEPHAVIAGFTD*







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