SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G38640 | AT | Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0045947 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of translational initiation | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005851 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 2B complex | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0005085 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1467 | KOG | Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) | JGI | ISS | |
| PTHR10233 | Panther | TRANSLATION INITIATION FACTOR EIF-2B | JGI | ISS | |
| PTHR10233:SF14 | Panther | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA | JGI | ISS | |
| PF01008 | PFAM | Initiation factor 2 subunit family | JGI | ISS | |
| UniRef100_G7ZY49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor eIF-2B delta subunit n=1 Tax=Medicago truncatula RepID=G7ZY49_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E34C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E34C related cluster n=1 Tax=unknown RepID=UPI000233E34C | SoyBase | E_val: 0 | ISS |
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Glyma19g05900 not represented in the dataset |
Glyma19g05900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g07460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g044300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05900.1 sequence type=CDS gene model=Glyma19g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCCTCACGCCGTGCCCCACGCGCCGTGATCGACCCTATACCGAAGATCCGCCAAGTGGGGTTCTTTGCCCCGCCCGAGCGCTCTCAGTCGGGTCCTCCCGACCCGACCCACTCCTCTCCCCCGATCTCCAGCTCCCTCTCCCCGGTCATGATCCCGCCCCCGCGCCACCTCTCCGACAACCTCCTTCTCCACGCCCCCCGCCCCGCCTCCTCCCCCCTCTCCGCCGCCGCTGCCGCCGGAGGAAGCGGAAACTCCTTTGACTACGGCGCGGTCTTCTTCCCCGCCCCGCTCTCTCCCGCGATACCGTCGTCTTCGTACTCCAGCAGAATCATCGCCACCACCGGCGAGGGAGGGTTCTTCAAGGGGAACGGCGCCGGCGGCGGAAAGGTGGCGGCGTCATCGTTCCCTCGCGGAGGATTCGACTTGACGGCGATGAAGAAGGCGGCGGCGGCGAGTGTTGTGGTGCCGGCGAGCGAGTTGACTACGGTTTCCGTGGTAAATGATTCGCTCGGGATTCCTGAAAAAGAAAAAGGAAATAAAGCAGGAGGGTCAGCAGTGGAAGTGAAAGACCAACCTAATAGTTCAAAGCAGCAGAAACCCAAACTCTCAAAAGCTGAAAGACGTGCACTCCAAGAATCTCAACGGGCTGCAAAGGCTGCTGCAAAAGGTGAAGGAAGTAAGGCATCTGGAACTGTGGCTACAATGAATGCAAAACCAGCTAAAGCTGTAAAGCCTGCACAGAAAGTTGATAATGCAGCAGTTGCAGCGTCTGAAAAGAAGGGAGGTGAGATTCCACCAGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCATGCAGTATGACGACAAGAGTCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTGAAACAAACTGAAGCTAGGAATAGAGTTGAGTTGTTCAGGCATTTGCCACAATATGAGCATGGGAGTCAGCTTCCAGATCTCGAGGCAAAGTTTTTCCATCTTTCTCCAGTGCACCCTTCTGTTTATAAGGTGGGTTTGCAATATCTAACTGGAGATATAGCTGGTGGCAATGCTCGTTGTATTGCAATGCTTCAAGCATTCCAAGAGGCCATCAAAGACTACAAGGTTCCACATGAGAAGACTCTTGTGAGAGACTTGACAGCAAAAATTAGTAGTTATGTATCATTTCTTATTGAATGTCGGCCTCTGTCAATCAGCATGGGAAATGCAATTCGGTTTCTTAAAAGTCATATAGCCAAGCTACCTTTGACCTTGTCTGAATCAGAAGCAAAAGCTTCTCTCCAGTCAGATATTGAGCGTTTTATAAGTGAAAAGATTATACTTGCCAACAAGGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGATGGTGATGTTCTTCTAACATATGGGTCCTCATCAGCTGTTGAAATGATACTATTACATGCACATGAGTTGGGGAAGCAGTTTCGTGTTGTCGTAGTTGACTCTCGTCCAAAGCTTAGAGGGCAACTCTTACTTCGCAGGCTTGTGGAGAAAGGTCTTAGCTGTACATATACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTTACTCGGGTTTTTCTGGGTGCTTCAGCAGTTTTGTCTAATGGAACAGTATATTCAAGAGTAGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTTTTAAATCTGGTTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACAAGTGTGCCTGTGATTGTAAGAGAATATGGGAGAGAACAGGTCTGGATATAA
>Glyma19g05900.1 sequence type=predicted peptide gene model=Glyma19g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPSRRAPRAVIDPIPKIRQVGFFAPPERSQSGPPDPTHSSPPISSSLSPVMIPPPRHLSDNLLLHAPRPASSPLSAAAAAGGSGNSFDYGAVFFPAPLSPAIPSSSYSSRIIATTGEGGFFKGNGAGGGKVAASSFPRGGFDLTAMKKAAAASVVVPASELTTVSVVNDSLGIPEKEKGNKAGGSAVEVKDQPNSSKQQKPKLSKAERRALQESQRAAKAAAKGEGSKASGTVATMNAKPAKAVKPAQKVDNAAVAASEKKGGEIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEAKFFHLSPVHPSVYKVGLQYLTGDIAGGNARCIAMLQAFQEAIKDYKVPHEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSHIAKLPLTLSESEAKASLQSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGKQFRVVVVDSRPKLRGQLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASAVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGNPDVISNVLGREDVKHLDGWANIENLQLLNLVYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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