Glyma19g05890 - SoyBase

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Report for Sequence Feature Glyma19g05890

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6539494
stop:	6543559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38630	AT	Annotation by Michelle Graham. TAIR10: cytochrome B561-1 \| chr5:15466141-15467511 FORWARD LENGTH=230	SoyBase	E_val: 3.00E-120	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008805	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbon-monoxide oxygenase activity	SoyBase	N/A	ISS
KOG1619	KOG	Cytochrome b	JGI		ISS
PTHR10106	Panther	CYTOCHROME B561	JGI		ISS
PTHR10106:SF0	Panther	CYTOCHROME B561-RELATED	JGI		ISS
PF03188	PFAM	Eukaryotic cytochrome b561	JGI		ISS
UniRef100_G7ZY50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b561 n=1 Tax=Medicago truncatula RepID=G7ZY50_MEDTR	SoyBase	E_val: 2.00E-138	ISS
UniRef100_G7ZY50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cytochrome b561 n=1 Tax=Medicago truncatula RepID=G7ZY50_MEDTR	SoyBase	E_val: 2.00E-138	ISS

Expression Patterns of Glyma19g05890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05890 not represented in the dataset	Glyma19g05890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05890

Paralog	Evidence	Comments
Glyma13g07450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g044200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g05890

Limit To All Plant Sequences

>Glyma19g05890.2   sequence type=transcript   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAAGTAATTTTCTTAATAAATGCCTGATTTTTTTCTTTATATTTCAATTCATAAGTTGTAGAACATATTAACAATTATTTATAATTAAATAATACCGTAAACTACACCCTCAATATATGATTATTAAACTTCATGACTTATTTTACTCAAAATTCAACTCCTAATTTTAATTTTAACGACTGTAATGAAGGAAATTAAGATTTCTTTCTGGTGTGGGAAGCAACAGTTGCAAGTACATGTTTGAAAATTTACAATCAAGACTCTTACTTTTATTTTCTTTGGATCTGTATTGAAATATTCACCACAATAATTTCAACTGCAAATATGATTAATAGCTGACCCATTTTCTCTGTTTTTATATATAGTCTGCGTTTTCTTCCGGTTCCCTCTCATCCCTCTCTCTCTCTCTTCCATTTTCTCTCTCTAGATAGGTAAAAATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTAACTCTCTCTCTCTCACACACACACGCATCTGTTTTCATTTTGCGTCGTTTTCTCAATTTTCTCAGTTTTTTTGTTTTCGCAATTTTAATTTCGTTTTTGTTTTGGAAGATAAACTTAAAAGGGTAGAGTGGTTTTTGAGTGTTTGATTGTGAATTTTGTTGTTTTTTGTTGTCCTGTAGGCCTCTTCTTTCTTTTTTTTTTAGCTTCAAATTTTTGTGTGGTTTAAGGTTTGCATTTTCAGCATTATGTGATGCTTGTGTGGTTTTGGTTTTAAAGCTTTTTTTTTTTTTTGGTGTGTGTGTGTGGTTTTGTTTTTCCGATGTAGGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGACCATCATCTATATGATTCAAAATTGAGGAACATTAACATTTGTATCATCTTTAATACAAGGTTACATGGATGTATGAAAACAAATTCATTAAACGTGTATCCAGGTTTAATTTTATGTTCTATTTTATTTACTATGTGTATTTTCCTTCTATTAGTGAATATTCGTGTTTTGTGCATATTAATTGTCCCAATTGAGCCAGCTAACTTTGAGCGATGAGATGAGTCTATAATGATATAAATGTGTTCCTCGGAGGA

>Glyma19g05890.3   sequence type=transcript   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAAGTAATTTTCTTAATAAATGCCTGATTTTTTTCTTTATATTTCAATTCATAAGTTGTAGAACATATTAACAATTATTTATAATTAAATAATACCGTAAACTACACCCTCAATATATGATTATTAAACTTCATGACTTATTTTACTCAAAATTCAACTCCTAATTTTAATTTTAACGACTGTAATGAAGGAAATTAAGATTTCTTTCTGGTGTGGGAAGCAACAGTTGCAAGTACATGTTTGAAAATTTACAATCAAGACTCTTACTTTTATTTTCTTTGGATCTGTATTGAAATATTCACCACAATAATTTCAACTGCAAATATGATTAATAGCTGACCCATTTTCTCTGTTTTTATATATAGTCTGCGTTTTCTTCCGGTTCCCTCTCATCCCTCTCTCTCTCTCTTCCATTTTCTCTCTCTAGATAGGTAAAAATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGCTTATGGAGAAGCTTGTCCGAACATGGTCCTGTTCTACTCGTGAACTTGGCTTCCATCATTTCCATGTATCTAATTGTTTGCTACAATGTTAATTAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGACCATCATCTATATGATTCAAAATTGAGGAACATTAACATTTGTATCATCTTTAATACAAGGTTACATGGATGTATGAAAACAAATTCATTAAACGTGTATCCAGGTTTAATTTTATGTTCTATTTTATTTACTATGTGTATTTTCCTTCTATTAGTGAATATTCGTGTTTTGTGCATATTAATTGTCCCAATTGAGCCAGCTAACTTTGAGCGATGAGATGAGTCTATAATGATATAAATGTGTTCCTCGGAGGA

Coding sequences of Glyma19g05890

Limit To All Plant Sequences

>Glyma19g05890.1   sequence type=CDS   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGA

>Glyma19g05890.2   sequence type=CDS   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGA

>Glyma19g05890.3   sequence type=CDS   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGCTTATGGAGAAGCTTGTCCGAACATGGTCCTGTTCTACTCGTGAACTTGGCTTCCATCATTTCCATGTATCTAATTGTTTGCTACAATGTTAATTAG

Predicted protein sequences of Glyma19g05890

Limit To All Plant Sequences

>Glyma19g05890.1   sequence type=predicted peptide   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPPVVRFPIFTAVRAVGVAVTVLLLTWAVHFRGGLALVSDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQWGAGFATFWYPGGSRNSRAALLPWHVFFGIYIYCLAIATTATGILEKATFLQVNNIISRYSNEALLVNSLGILIVILGGFVILGIVTPVYGKADVIRGNE*

>Glyma19g05890.2   sequence type=predicted peptide   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQWGAGFATFWYPGGSRNSRAALLPWHVFFGIYIYCLAIATTATGILEKATFLQVNNIISRYSNEALLVNSLGILIVILGGFVILGIVTPVYGKADVIRGNE*

>Glyma19g05890.3   sequence type=predicted peptide   gene model=Glyma19g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPPVVRFPIFTAVRAVGVAVTVLLLTWAVHFRGGLALVSDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQCLWRSLSEHGPVLLVNLASIISMYLIVCYNVN*

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