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Report for Sequence Feature Glyma19g05890
Feature Type: gene_model
Chromosome: Gm19
Start: 6539494
stop: 6543559
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g05890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G38630 AT
Annotation by Michelle Graham. TAIR10: cytochrome B561-1 | chr5:15466141-15467511 FORWARD LENGTH=230
SoyBase E_val: 3.00E-120 ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009750 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0008805 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbon-monoxide oxygenase activity
SoyBase N/A ISS
KOG1619
KOG
Cytochrome b
JGI ISS
PTHR10106 Panther
CYTOCHROME B561
JGI ISS
PTHR10106:SF0 Panther
CYTOCHROME B561-RELATED
JGI ISS
PF03188 PFAM
Eukaryotic cytochrome b561
JGI ISS
UniRef100_G7ZY50 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b561 n=1 Tax=Medicago truncatula RepID=G7ZY50_MEDTR
SoyBase E_val: 2.00E-138 ISS
UniRef100_G7ZY50 UniRef
Annotation by Michelle Graham. Best UniRef hit: Cytochrome b561 n=1 Tax=Medicago truncatula RepID=G7ZY50_MEDTR
SoyBase E_val: 2.00E-138 ISS
Expression Patterns of Glyma19g05890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g05890
Paralog Evidence Comments
Glyma13g07450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g05890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g044200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g05890
Transcripts of Glyma19g05890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05890.2 sequence type=transcript gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGTTAAGTAATTTTCTTAATAAATGCCTGATTTTTTTCTTTATATTTCAATTCATAAGTTGTAGAACATATTAACAATTATTTATAATTAAATAATACCGTAAACTACACCCTCAATATATGATTATTAAACTTCATGACTTATTTTACTCAAAATTCAACTCCTAATTTTAATTTTAACGACTGTAATGAAGGAAATTAAGATTTCTTTCTGGTGTGGGAAGCAACAGTTGCAAGTACATGTTTGAAAATTTACAATCAAGACTCTTACTTTTATTTTCTTTGGATCTGTATTGAAATATTCACCACAATAATTTCAACTGCAAATATGATTAATAGCTGACCCATTTTCTCTGTTTTTATATATAGTCTGCGTTTTCTTCCGGTTCCCTCTCATCCCTCTCTCTCTCTCTTCCATTTTCTCTCTCTAGATAGGTAAAAATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTAACTCTCTCTCTCTCACACACACACGCATCTGTTTTCATTTTGCGTCGTTTTCTCAATTTTCTCAGTTTTTTTGTTTTCGCAATTTTAATTTCGTTTTTGTTTTGGAAGATAAACTTAAAAGGGTAGAGTGGTTTTTGAGTGTTTGATTGTGAATTTTGTTGTTTTTTGTTGTCCTGTAGGCCTCTTCTTTCTTTTTTTTTTAGCTTCAAATTTTTGTGTGGTTTAAGGTTTGCATTTTCAGCATTATGTGATGCTTGTGTGGTTTTGGTTTTAAAGCTTTTTTTTTTTTTTGGTGTGTGTGTGTGGTTTTGTTTTTCCGATGTAGGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGACCATCATCTATATGATTCAAAATTGAGGAACATTAACATTTGTATCATCTTTAATACAAGGTTACATGGATGTATGAAAACAAATTCATTAAACGTGTATCCAGGTTTAATTTTATGTTCTATTTTATTTACTATGTGTATTTTCCTTCTATTAGTGAATATTCGTGTTTTGTGCATATTAATTGTCCCAATTGAGCCAGCTAACTTTGAGCGATGAGATGAGTCTATAATGATATAAATGTGTTCCTCGGAGGA
>Glyma19g05890.3 sequence type=transcript gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGTTAAGTAATTTTCTTAATAAATGCCTGATTTTTTTCTTTATATTTCAATTCATAAGTTGTAGAACATATTAACAATTATTTATAATTAAATAATACCGTAAACTACACCCTCAATATATGATTATTAAACTTCATGACTTATTTTACTCAAAATTCAACTCCTAATTTTAATTTTAACGACTGTAATGAAGGAAATTAAGATTTCTTTCTGGTGTGGGAAGCAACAGTTGCAAGTACATGTTTGAAAATTTACAATCAAGACTCTTACTTTTATTTTCTTTGGATCTGTATTGAAATATTCACCACAATAATTTCAACTGCAAATATGATTAATAGCTGACCCATTTTCTCTGTTTTTATATATAGTCTGCGTTTTCTTCCGGTTCCCTCTCATCCCTCTCTCTCTCTCTTCCATTTTCTCTCTCTAGATAGGTAAAAATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGCTTATGGAGAAGCTTGTCCGAACATGGTCCTGTTCTACTCGTGAACTTGGCTTCCATCATTTCCATGTATCTAATTGTTTGCTACAATGTTAATTAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGACCATCATCTATATGATTCAAAATTGAGGAACATTAACATTTGTATCATCTTTAATACAAGGTTACATGGATGTATGAAAACAAATTCATTAAACGTGTATCCAGGTTTAATTTTATGTTCTATTTTATTTACTATGTGTATTTTCCTTCTATTAGTGAATATTCGTGTTTTGTGCATATTAATTGTCCCAATTGAGCCAGCTAACTTTGAGCGATGAGATGAGTCTATAATGATATAAATGTGTTCCTCGGAGGA
Coding sequences of Glyma19g05890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05890.1 sequence type=CDS gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGA
>Glyma19g05890.2 sequence type=CDS gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGTAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTATATCTATTGCTTGGCTATAGCCACAACTGCTACTGGTATTCTAGAAAAAGCTACATTCCTTCAGGTCAACAACATCATATCACGCTATTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGAATTGTTACTCCAGTTTATGGTAAAGCTGATGTCATAAGGGGAAACGAGTGA
>Glyma19g05890.3 sequence type=CDS gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTACTCCGCCGGTGGTAAGGTTTCCGATCTTCACGGCGGTGAGGGCGGTCGGCGTTGCCGTTACTGTTCTTCTGCTGACGTGGGCCGTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAACTTCAAAAAATCAGTTCATCTTGCGTTACAGTTTGCCGCTCTCATTTTGAGCTTGATTGGTGTCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGCTAGGCCTTGCATGCCTTTTCCTATTCACCATCCAGTGCTTATGGAGAAGCTTGTCCGAACATGGTCCTGTTCTACTCGTGAACTTGGCTTCCATCATTTCCATGTATCTAATTGTTTGCTACAATGTTAATTAG
Predicted protein sequences of Glyma19g05890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g05890.1 sequence type=predicted peptide gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATPPVVRFPIFTAVRAVGVAVTVLLLTWAVHFRGGLALVSDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQWGAGFATFWYPGGSRNSRAALLPWHVFFGIYIYCLAIATTATGILEKATFLQVNNIISRYSNEALLVNSLGILIVILGGFVILGIVTPVYGKADVIRGNE*
>Glyma19g05890.2 sequence type=predicted peptide gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQWGAGFATFWYPGGSRNSRAALLPWHVFFGIYIYCLAIATTATGILEKATFLQVNNIISRYSNEALLVNSLGILIVILGGFVILGIVTPVYGKADVIRGNE*
>Glyma19g05890.3 sequence type=predicted peptide gene model=Glyma19g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATPPVVRFPIFTAVRAVGVAVTVLLLTWAVHFRGGLALVSDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTLSGTKNFKKSVHLALQFAALILSLIGVWAAWKFHIDKGIDNFYSLHSWLGLACLFLFTIQCLWRSLSEHGPVLLVNLASIISMYLIVCYNVN*