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Report for Sequence Feature Glyma19g05864

Feature Type:gene_model
Chromosome:Gm19
Start:6491752
stop:6503440
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79000AT Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the CBP family 1 | chr1:29716933-29723984 REVERSE LENGTH=1697 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006357GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0006473GO-bp Annotation by Michelle Graham. GO Biological Process: protein acetylation SoyBaseN/AISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003712GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity SoyBaseN/AISS
GO:0004402GO-mf Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1778 KOG CREB binding protein/P300 and related TAZ Zn-finger proteins JGI ISS
PTHR13808Panther CBP/P300-RELATED JGI ISS
PF02135PFAM TAZ zinc finger JGI ISS
PF08214PFAM Histone acetylation protein JGI ISS
UniRef100_G7JBQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase n=1 Tax=Medicago truncatula RepID=G7JBQ0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N6K0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N6K0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05864 not represented in the dataset

Glyma19g05864 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g044000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g05864.1   sequence type=CDS   gene model=Glyma19g05864   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTGCCGCGTTTGTTTCCCTCCCATTTGTGGTCCCATGTGAACGAGGTGGCAATGTCAAACTTGCTTTAAATACCCTCCCTACCTCATCCTCTCTCTCTCACTCACTCACTCACTCACTAGCTTTCCGTGCATTTCTTCCTTCATTCCCCTCGTTTTCCATCACTCACTCTAATTTCGTGTCTTTTATTATTTGGGGAGACACATTACCCCACAAAACACAAAACCCTTTTTGTTCCGTAACCCGAGACAGCGACTCTCGCAGACACAGAAAAAGTCGCACAAAAGCGACCTTCACTGACTCTCTCGCAATCAGAAAAATGTTTCGGATAAGCAAGATGCACGCCAAAGGTTCTAATCTCGGGAATAGTTGCAAACAAACACCAGGAAGTTCTTCATCATTTGTCCCAAACCATCCTTTGCAGAGAGATTTTGATTTAAGACATCAAGATTATATAATGAATCAAGCAAGGTTCTTCTTTGACTGGCGAAAAGATCCTGAAATTAGCCAATGCCGTAACTTGATAAAAAATGATATTTCTACAATTTTGCATTCCCGACATCCTAATGATCAAGGACAGGCCTCTGTTTTGGCAAACTTTCTGGAAAATCGGCTATTTGTTGAGGCTGCTTCAAAGGATGAGTATATCAACCGACAGACAATTATGCAACGATTGGATACACAACTCAAGAAGTTGTATGCCCCAAAATGCAGCCAAGTAAATAGCTCTATTGCTTGCACATCCCAGATGGTGCCCTCTTTTGGGTTATTGCAAGCTAGGTCTAATGGAAGTGTACCAGAACCTGCTTTTCATAACGTGGCTGGTCCTATCACCAATGCAACCAATTATTGTGCAGTGCCTGTAGATAATAAAAATAGCTTCCCAAATGGAGGGTTGTCTTATTCTTCTTTTGTTCCCCAACCGGTTTTTTTACCAGATAACCATCCATCCATCGCTACATGCACTGATTTGGATGTGCTTCCTAACTCTTTTGTTTCTGGTGGGAGAAGCAATTTGAAAGCTTGCTCCAAGTCAATTAGTTCCTATTTTCCTCAGCGACAGGCAGACGATTGGAAGACGCTTCTGGTGAAGTATGGAGATTGTTCTAGGACTACAACGGGAAAATCCGTCCAATCTGAATCTTCAAATTTGATGACCCCTCAAGATGCCTTGAGGGAATTTTCAAAAGTTTTTGATCTTCCTCCTGTCCCGAGAAGCCTAGGAGATATTAGGCAACATCAACACCGGAAGCGAGATTTTCAACGGAATTTAAAACCTTTTATGCAGCCATATGGGCTTCCTGGTAAAACTAATATGGCCCAGCCTAATGCATTCTCCAATCAAGGTGAACGTTGCAGTCAAATGTTGGGGCATAAAACATTGAAACAACCACAACTTTTCAAAAGAAGTCTCAATGGGGATCAACAGTTCACTTCAGGGAGCTCAGTAGATCTTTTTGGTTTAGATGATTCTGATAATATGAATTCATGTGGTAGTTCCAAAGTTTCGGTTGAACAGAGGATCATGCTTGAATATCTTTATTTGAAGAATTTTAACAATATTTCACGGGGTAATGTTATGAAATATCTGCATTCAACAGTTTGTCTTAAAGGGACATGTAATTGTGGATGGTATATCAAGCTATTATTGCATTTTGATGACTGTAAAGATGATGGTTGTCGTACGTGTTACTCTTGGAAATTGCATGGCACTGATATTCTTGGGGGTCATTTGAAATTTCCTGATATTATGGGTTCTGTTGAAAGAAAAAATGACGCTCCTTCTGGAAATACTGAAGCCATGCTACCACCTGAAAAAAGAAGAAAAATGGAGCCCGCTTTTGGTGTCCCTTTAATTAATAATGCAAGTTTGGATCAGTCGACTCAGAAAATGGTTCACCCTCGTTCTTCTGAAGCTCTTTCAGAATTGCCATTGAGCCAAAAAGCTGATCAAGAGATGGAGATGTCACCAAATCCAACAGCTAATAGTGTACATATGGAGGACAATCAAGGAAAAATCAGGTTGAACCAAGATGAGATAAATGCTACAAAAGAAGCCATTAAGCCAAAAGTTGATGAAGAGAAGGAAAGGAAGTCCCCAAATCCAACACTTAATACTGCATATATGGAAGACATAAAAGGCAGAATTGAATTGGACCAGGATGAGATAAATGCTACAAAAGAAATCATTGAGCCAAAAGTTGATCAAGAGATGGAAAGGATGTCCCAAAATCCAACAGTTACTGTAGATATGGAGGGCATACAAGCCATAACCGGGTTCAACCAGGATGGGATAAATGCCACAAAAGAAGTCATTGAGCCAAAATTTGATGAAGAGAAGGAAAGGAAGTCCCCAAATTCAATAGTTAATACTGCAGATAAAGAGGACACACAAGGCAGAACTAAGTTCATCCAACATGGAATAAATGTTGATCTAGAGATGGAAAGGAAGTCCTCAAAAACAACAGTTAATACTGTTTCCTTAATTGATTTTTTCACAAGTAATCAAATAAAGGAACACATTACAAGCCTGAGAAAGCAATTTAATCAGAGTACAATGGTTGAAGAATCAGGAAGTGATGTTTACACATGCCAATTATGTGGAATGGGAACACTTTCTTTTGCCCCCGTGCCAATCTATTGCTTTTGTTGTGGCATCCGCATCAAGCGAAACGCATGCTATTACTATAGAAGAGAAGAAGATGATACACAGCATTGCTTTTGCAGTGTTTGCTTTAGGACTTCTCGAGGTGGGAACATCAAATTCAATGGAACATCTGTTTCCAAGACAGATCTTGATAAAAAGACAAATAATAGAGAATTTGAAGAATCGTGGGTTGAATGCAATAAATGCAAATGTTGGCAGCATCAAATATGTGCACTCTACAACGATAAAAGAGATTTGGACTACAGAGCTGAGTATACATGTCCTATATGCCGCTTAAAGGAAATTGGAAATGGAATGCATGCACCCTTACCGAAGACAGCGGCTATGTTTAGTGCTAATGACTTGCCCAGAACCATGCTTAGCGACCACATAGAGAGCAGACTTTTTAAGCGTCTCTGGCAAGAGGATGAAGATTGGGCAAAAGCAGGGTATAAGAATCTTGATGAGGTTTTCGAAGCAGAAAGTCTTTCTGTTAGAGTTGTGTTATCCGTTGACAAACAATTGAAAGTGAAGAAACAGTTTCTGGACATATTTGGGGAGGAGAATTACCCTTCTGAATTTCCTTATACATTAAAAGTTATTCTTCTGTTTCAGAAGATTGAAGGAGTGGATGTATGCCTTTTCGCAATGTATGCTCAGGAGTTTGGCTCAGAATGTGGCTATCCTAATCAGCGTTCTGTGTACATTTCATATCTCGATTCTGTCAAGTATTTTAGGCCTAAAAGAGTGACTAAAAGTGGAGAAGCTCTTCGTACCATCGTTTACCATGAGATATTGATTGGATATCTTGATTTTTGCAAGAAACGAGGTTTCACAACTTGCTATCTATGGGCCTGTCCACCTATGAAGGGAGAAGATTATTTACTATATTGTCATCCTGACACCCAAAAAACTCCCAAGAAAGATAAATTACGGCAGTGGTATCATTCAATGCTAAGAAAGGCCGCTGAAGAAAATATCGTTGTTGGTTTAACTAACTTACATGATCATTTCTTTGTTACTACTGGAAGTTGTGACTCCAAGGTAACAGCTGCTCGTTTGCCTTACTTTGATGGGGACTTCTGGTCTGGTGCTGCTATGGATAAAGCCAGGCACATTGAACAAGAGTGTGGAGGAGATTATAAAATGATCTTCGATAAAGTAGTATCGAAAAGATGTTTAAAGTCCATGGGACATGTAAATCCTCCTTCTGAAGGAACTGCCAAAGACATTCTAGTGATGCATAAATTGGGACAAACCATATTACCTTTCAAGGAAGATTTTCTCGTAGTTCAATTTCAGTATGTTTGCATGCACTGCCATGAAGTAATAGCAAATGGGAAGCGATGGTTTTGCACCGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTGTTCACTCACACATTTCAGCCAAAGGCGAGAGGCATAGACTTCATCAGGTCCTCATGGATGACGTCCTTGGTGATACTAAGGAGAATGATATCATCCTTGATAATGGGTTATTTGATTCCCGACACAACTTTCTGAGCTTTTGCCAAAGGAACAGGTTTCAGTTTGACTCACTCCGCAGAGCCAAGTATTCCTCAATGATGATCCTCTACCTTGTGAAGAATCCTACTCTTCTGATTGTTGGAACAACATGCCGCGTTTGCTCTAAAAACAATGTGTCCCAGCGCTACTGGAAATGTGAGAATTGCCCGGAATTCACTGTCTGTTCTGCATGCTACAACGAGAGAGGTGCTAGTTGCCATGCACACACGTTGAGTGAAGCTTATTCACCAGCGCAATCTCCTTCAGGGAATCAAGAATTGCAGCAGAACTCAGCAATGTTGCAGCAACTTCTGGATGTTATTGAACATGCATCTCTGTGTCACTCAATCAAAACTCAACCATGCACTTACCCACATTGCAGTCAAATTAAAAAGCTGTTCGCTCATGCCAGTAGGTGTGAAGTTCGACTTTCTGGGGGGTGCCAATTTTGTAAGAAGGTTTGGCAGGGACTGACTTTACACTCAAGGAATTGCAAAGACTCAGCATGTCGCATACCCCGTTGCATGGATCTGAAGAAACAAATAGAATGGATAGCAACACAAGCTGAATCGCGGCTTAGGGCTGCAGTTTTGCAATCGGAAGATAGCAGATAA

>Glyma19g05864.1   sequence type=predicted peptide   gene model=Glyma19g05864   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCAAFVSLPFVVPCERGGNVKLALNTLPTSSSLSHSLTHSLAFRAFLPSFPSFSITHSNFVSFIIWGDTLPHKTQNPFCSVTRDSDSRRHRKSRTKATFTDSLAIRKMFRISKMHAKGSNLGNSCKQTPGSSSSFVPNHPLQRDFDLRHQDYIMNQARFFFDWRKDPEISQCRNLIKNDISTILHSRHPNDQGQASVLANFLENRLFVEAASKDEYINRQTIMQRLDTQLKKLYAPKCSQVNSSIACTSQMVPSFGLLQARSNGSVPEPAFHNVAGPITNATNYCAVPVDNKNSFPNGGLSYSSFVPQPVFLPDNHPSIATCTDLDVLPNSFVSGGRSNLKACSKSISSYFPQRQADDWKTLLVKYGDCSRTTTGKSVQSESSNLMTPQDALREFSKVFDLPPVPRSLGDIRQHQHRKRDFQRNLKPFMQPYGLPGKTNMAQPNAFSNQGERCSQMLGHKTLKQPQLFKRSLNGDQQFTSGSSVDLFGLDDSDNMNSCGSSKVSVEQRIMLEYLYLKNFNNISRGNVMKYLHSTVCLKGTCNCGWYIKLLLHFDDCKDDGCRTCYSWKLHGTDILGGHLKFPDIMGSVERKNDAPSGNTEAMLPPEKRRKMEPAFGVPLINNASLDQSTQKMVHPRSSEALSELPLSQKADQEMEMSPNPTANSVHMEDNQGKIRLNQDEINATKEAIKPKVDEEKERKSPNPTLNTAYMEDIKGRIELDQDEINATKEIIEPKVDQEMERMSQNPTVTVDMEGIQAITGFNQDGINATKEVIEPKFDEEKERKSPNSIVNTADKEDTQGRTKFIQHGINVDLEMERKSSKTTVNTVSLIDFFTSNQIKEHITSLRKQFNQSTMVEESGSDVYTCQLCGMGTLSFAPVPIYCFCCGIRIKRNACYYYRREEDDTQHCFCSVCFRTSRGGNIKFNGTSVSKTDLDKKTNNREFEESWVECNKCKCWQHQICALYNDKRDLDYRAEYTCPICRLKEIGNGMHAPLPKTAAMFSANDLPRTMLSDHIESRLFKRLWQEDEDWAKAGYKNLDEVFEAESLSVRVVLSVDKQLKVKKQFLDIFGEENYPSEFPYTLKVILLFQKIEGVDVCLFAMYAQEFGSECGYPNQRSVYISYLDSVKYFRPKRVTKSGEALRTIVYHEILIGYLDFCKKRGFTTCYLWACPPMKGEDYLLYCHPDTQKTPKKDKLRQWYHSMLRKAAEENIVVGLTNLHDHFFVTTGSCDSKVTAARLPYFDGDFWSGAAMDKARHIEQECGGDYKMIFDKVVSKRCLKSMGHVNPPSEGTAKDILVMHKLGQTILPFKEDFLVVQFQYVCMHCHEVIANGKRWFCTECKKFQECERCHTVHSHISAKGERHRLHQVLMDDVLGDTKENDIILDNGLFDSRHNFLSFCQRNRFQFDSLRRAKYSSMMILYLVKNPTLLIVGTTCRVCSKNNVSQRYWKCENCPEFTVCSACYNERGASCHAHTLSEAYSPAQSPSGNQELQQNSAMLQQLLDVIEHASLCHSIKTQPCTYPHCSQIKKLFAHASRCEVRLSGGCQFCKKVWQGLTLHSRNCKDSACRIPRCMDLKKQIEWIATQAESRLRAAVLQSEDSR*







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