SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02420 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:496179-498772 REVERSE LENGTH=348 | SoyBase | E_val: 1.00E-33 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1N6K3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6K3_SOYBN | SoyBase | E_val: 3.00E-44 | ISS |
| UniRef100_Q9M898 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g02420/F16B3_5 n=1 Tax=Arabidopsis thaliana RepID=Q9M898_ARATH | SoyBase | E_val: 7.00E-31 | ISS |
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Glyma19g05820 not represented in the dataset |
Glyma19g05820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05820.1 sequence type=CDS gene model=Glyma19g05820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATGTATGTTGGTGGCAGTTCATCCCAATCGACGTTCATCAACTACGTTATCATCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTAGATCAACTAATAGAACTTCAGGGACATCCACAACTGCAGGTCCAAGTCCTAGTCCATTGGGATCGGCAAACAGTTCTATTTTTTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGTCATTCCACTGGTACCGAAGCATCTTTCTCATAGGACTTATCGCCTTTGTTTTTTAGGCACTCTTTGCTCTTCTTGTACTCATTCCAAAAGCTTGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAATTGCTTCAAAGGATTTTATATACTTCATCTACTATCTTACATTTGTTACACATTACTACAAAAAAGGCTTTCTACACAAAGATGGCCACGTTGTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCGTTTGAACATGTTGCCAAGTTCCATAGACTAATTTTAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAATTGGACTTGGATTCCTACTGATCATCTCATTCTTCTCATAAAATGGCATGGCAGATTTTTTGCCAACCGCTATAGGCGATTTGTGAAGGGAGGCCCACTATGGTGGCGCCATAGGACACAATGGTGTGTTTATATGGAAGAATTTTGGCCTTCTGCCATTGATAACACTGGGTTCTATGCTACATATCCCATTCCTATGGTGGCAATGGAACATAATTCAAACATTCATTTATTTTTCTGGTGTCATGTTCCTGTTACTGCCCCTTACCGTCAGAGTGTTTGGGTGCAAATTGGGAGGATGGTTAATCCACTCATCCAACGCCATGCCCCATTCTTAGAGACTCCTAAATCTACAATTCAAAGATGGTGA
>Glyma19g05820.1 sequence type=predicted peptide gene model=Glyma19g05820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high NVCWWQFIPIDVHQLRYHHHRPQQIINLVQEVLDQLIELQGHPQLQVQVLVHWDRQTVLFFVYAWVFVVAFLAVIPLVPKHLSHRTYRLCFLGTLCSSCTHSKSLEFAGLASLLSVNNCFKGFYILHLLSYICYTLLQKRLSTQRWPRCTSHLCLKFALIPILCWSFEHVAKFHRLILVALPCTGSTWKSLVFGWNWTWIPTDHLILLIKWHGRFFANRYRRFVKGGPLWWRHRTQWCVYMEEFWPSAIDNTGFYATYPIPMVAMEHNSNIHLFFWCHVPVTAPYRQSVWVQIGRMVNPLIQRHAPFLETPKSTIQRW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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