Glyma19g05800 - SoyBase

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Report for Sequence Feature Glyma19g05800

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6396410
stop:	6397412
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17450	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr5:5755386-5756743 FORWARD LENGTH=149	SoyBase	E_val: 1.00E-38	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF14	Panther	COPPER CHAPERONE-RELATED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_G7KW42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein n=1 Tax=Medicago truncatula RepID=G7KW42_MEDTR	SoyBase	E_val: 2.00E-43	ISS
UniRef100_I1N6M4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6M4_SOYBN	SoyBase	E_val: 2.00E-64	ISS

Expression Patterns of Glyma19g05800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05800 not represented in the dataset	Glyma19g05800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g041100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05800

Limit To All Plant Sequences

>Glyma19g05800.1   sequence type=CDS   gene model=Glyma19g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCACTAGATTACCTCTCCAACTTTTGCACTGTAACCAGCACTAGGACCAAGCAGAAAGCAATGCAGACAACAGAGATAAAAGTGAGAATGGACTGCAATGGTTGCGAAAGAAGAGTGAGAAATGCAGTGAGTTCAATAAAAGGAGTGAAATCTGTGGAGGTGAACAGAAAGGAGAGCAGGGTGGTAATGAGAGGATATGTGGATCCAAAGAAGGTGCTGAAGAGGGTAAGGAGCACAGGGAAAGTAAGAGCTCAGTTTTGGCCATATGTTGAACAACATCTGGTCTAG

Predicted protein sequences of Glyma19g05800

Limit To All Plant Sequences

>Glyma19g05800.1   sequence type=predicted peptide   gene model=Glyma19g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGALDYLSNFCTVTSTRTKQKAMQTTEIKVRMDCNGCERRVRNAVSSIKGVKSVEVNRKESRVVMRGYVDPKKVLKRVRSTGKVRAQFWPYVEQHLV*

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