SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15880 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5185788-5187461 FORWARD LENGTH=348 | SoyBase | E_val: 7.00E-113 | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1N6M3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6M3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05780 not represented in the dataset |
Glyma19g05780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g041200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05780.3 sequence type=transcript gene model=Glyma19g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGCTGAGGTGGAGAATATGAAGCAGCCAAGTTGGGTATCTGATGGTTGGGAGGAAGAGAAGAAGGCAAATTCTAAAGCTGGATTGGAGGCAGAATCAGCTTTACTAGATGAATTGGAAAAGAAGAAGAAAGATATGAGTTCAATGGAGAATGCTGTACATGAGTTGGAGAAGAAATGGGCACAAGTTCAGGAAAATGCACTTAAACAGCCTTCCCCTGGGCAAAGGGAGAAGACATTGGATAAACACCTGCATGGTCTAATTGAGCAACTAGCAGTTAAACAGGCACAAGCTGAGGGCTTACTTGGTGAAATTCATCTGAAAGAAATGGAGCTCGAAAGATTGAATGGGCTATGGCGACGAACGGAGAGTAGCAATTCAGAGGCGAACACTGCTGCTAGGAATCGTTTCAGTAAAGGCTCCTCTGATAAGTTACATAGTTTGTCAGATTACGAAGGTCATCAGAGGCTTCCTTATCATTCTGCTGGCCGAACTGAAAGCCAGCAGAGGCTTATGCTACTCAGGTCGGCGTTCGTGCTCTATATTTTAGCTTTACATATACTGGTATTTATCAGGTTATCTTTTTAACAAGCATTGACACATGAAGATGACATGTTAATTTTTACCGCGCATGTTTGAATCTTTATTTGTACTCATTAAATATCCATTGCAAATATATACAGAAGTCTGTAAAAATATTTTTTGTTTTTTTCATTCATGCTTTGAAGTTTGATCAAAATGTAGCATCTATGCGTACAGTTACAGTTGAAAGAGAGATAAGTACAAGAAAATGCAGTTTTTGCAGCCGAATATGTTCAGA
>Glyma19g05780.2 sequence type=CDS gene model=Glyma19g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGGTTACTGGCATGGGCGGTAGGAGGTGGCGGAGGAAAAGAAGCGGAGGACGACGGCATCATCCCAATCCTGTTTTCTGCAGATCAGCAAAAGTACGTCAACGAACTCGATCAGAAGGCGAGCTCTCTCCGGCGTTGGATCCATGATCTACGGCAAAGATTGCCTCCCCAGGACATCTCCCAGAGCCTCCCACACCTCCACGCCCACTCCCTGGCCTCCAACGCCGCCCTCGCCCTCCAATTAAACTCCCACTCCACCACGCGCCAACAGGCCCAACTTAGAGAGGTGACGTTGAAGGAAGAGAATGCTGCGTTCGAAAATGCAATATCAGATTGTGAGAATAAAATAAAGGAGAAATTGCAGGAGGCTGATTTACTGAGGGAAAAGTTGAAGAGTTCAATGGAGAATGCTGTACATGAGTTGGAGAAGAAATGGGCACAAGTTCAGGAAAATGCACTTAAACAGCCTTCCCCTGGGCAAAGGGAGAAGACATTGGATAAACACCTGCATGGTCTAATTGAGCAACTAGCAGTTAAACAGGCACAAGCTGAGGGCTTACTTGGTGAAATTCATCTGAAAGAAATGGAGCTCGAAAGATTGAATGGGCTATGGCGACGAACGGAGAGTAGCAATTCAGAGGCGAACACTGCTGCTAGGAATCGTTTCAGTAAAGGCTCCTCTGATAAGTTACATAGTTTGTCAGATTACGAAGGTCATCAGAGGCTTCCTTATCATTCTGCTGGCCGAACTGAAAGCCAGCAGAGGCTTATGCTACTCAGGTCGGCGTTCGTGCTCTATATTTTAGCTTTACATATACTGGTATTTATCAGGTTATCTTTTTAA >Glyma19g05780.3 sequence type=CDS gene model=Glyma19g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGCCAAGTTGGGTATCTGATGGTTGGGAGGAAGAGAAGAAGGCAAATTCTAAAGCTGGATTGGAGGCAGAATCAGCTTTACTAGATGAATTGGAAAAGAAGAAGAAAGATATGAGTTCAATGGAGAATGCTGTACATGAGTTGGAGAAGAAATGGGCACAAGTTCAGGAAAATGCACTTAAACAGCCTTCCCCTGGGCAAAGGGAGAAGACATTGGATAAACACCTGCATGGTCTAATTGAGCAACTAGCAGTTAAACAGGCACAAGCTGAGGGCTTACTTGGTGAAATTCATCTGAAAGAAATGGAGCTCGAAAGATTGAATGGGCTATGGCGACGAACGGAGAGTAGCAATTCAGAGGCGAACACTGCTGCTAGGAATCGTTTCAGTAAAGGCTCCTCTGATAAGTTACATAGTTTGTCAGATTACGAAGGTCATCAGAGGCTTCCTTATCATTCTGCTGGCCGAACTGAAAGCCAGCAGAGGCTTATGCTACTCAGGTCGGCGTTCGTGCTCTATATTTTAGCTTTACATATACTGGTATTTATCAGGTTATCTTTTTAA
>Glyma19g05780.2 sequence type=predicted peptide gene model=Glyma19g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGLLAWAVGGGGGKEAEDDGIIPILFSADQQKYVNELDQKASSLRRWIHDLRQRLPPQDISQSLPHLHAHSLASNAALALQLNSHSTTRQQAQLREVTLKEENAAFENAISDCENKIKEKLQEADLLREKLKSSMENAVHELEKKWAQVQENALKQPSPGQREKTLDKHLHGLIEQLAVKQAQAEGLLGEIHLKEMELERLNGLWRRTESSNSEANTAARNRFSKGSSDKLHSLSDYEGHQRLPYHSAGRTESQQRLMLLRSAFVLYILALHILVFIRLSF* >Glyma19g05780.3 sequence type=predicted peptide gene model=Glyma19g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQPSWVSDGWEEEKKANSKAGLEAESALLDELEKKKKDMSSMENAVHELEKKWAQVQENALKQPSPGQREKTLDKHLHGLIEQLAVKQAQAEGLLGEIHLKEMELERLNGLWRRTESSNSEANTAARNRFSKGSSDKLHSLSDYEGHQRLPYHSAGRTESQQRLMLLRSAFVLYILALHILVFIRLSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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