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Report for Sequence Feature Glyma19g05721

Feature Type:gene_model
Chromosome:Gm19
Start:6275608
stop:6288118
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05721
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15900AT Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426 SoyBaseE_val: 7.00E-171ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_C6TLB5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TLB5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LFT0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 19 n=1 Tax=Arabidopsis thaliana RepID=Q9LFT0_ARATH SoyBaseE_val: 3.00E-168ISS

Expression Patterns of Glyma19g05721
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05721 not represented in the dataset
Glyma19g05721 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05721 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g041700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g05721
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05721
>Glyma19g05721.1   sequence type=CDS   gene model=Glyma19g05721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCCTACATATTCCTCTTCTCCGTGGGAACAATAGCTCTAAACAAACGATGTCAAAAGTGACTATGCCAATATTATTAGCCTTTTTTATATTTATTCTCACCACAATTTCTTGTTCTTTGTTAAGTTACCATTCACTACTGAAGATCAATGATGAATATAAGGAGCCATCTTTTGAATTTGATGATTTGATTGTGCCAGAATCCTTGCCCTCAACACCTGTGAATAAGTGTGACATTTTCACTGGTGATTGGGTGCCAAATCCAGAGGCACCATATTACACAAACACAACATGCTGGGAAATTCATGAGCACCAAAATTGCATGAAGTATGGGAGACCTGACACTGATTTCATGAAGTGGAGATGGAAGCCAAATGAGTGTGAACTCCCCATATTCAACCCTTTCCAGTTCCTACAAATTATGAGGGGAAAATCTTTGGCTTTTGTTGGAGACTCCATAGGCAGAAATCACATGCAATCCATGATTTGCCTCCTATCAAAGGTGGAGTGGCCCATAGATGTATCATACACAGATGACTTTTCCTTCAAGCGATGGAAGTACTCAAGCTACAACTTCACAATGACTACTTTTTGGTCACCCTATCTAGTTAGAGCTAAACAAGTGGATTCAAATGGTGGTCTCTACAATGTTTATCTTGATGAGTTTGATGAAAAATGGACTACTCAAATTAAAGAGTTTGACTATGTCATCATCAATGTAGGGCAATGGTTCTTAAGGCCAATGGTGTTCTATGAGAAACAAAAAATTGTTGGATGTCAATACTGTTCTTTAGAAAATGTCACTCACTTATCTTGGCACTATGGCTATAAAAAGGCTTTTGGGACTACATTTAAAGCCATCATTAATTTAGAAAACTTTAAGGGAGTAACATTTCTTAGAACATTTGCACCATCTCATTTTGAGAATGGGGTGTGGGATAAAGGTGGGAATTGCGTCAGAACTAAGCCATTTAAGAGTAATGAAACAAGGTTAGAGGGCAACAATTTGGAGTTACATACCATACAATTGGAACAGTTCAAAATTGCTGAGAAAGAAGCCAGAAAGAAAGGTTTGAAATTCATGTTACTTGACACCACACAAGCAATGTTACTAAGGCCAGATGGCCACCCTAATAAATATGGGCACTGGCCACATGAGAATGTGACATTGTTTAATGATTGTGTGCATTGGTGCTTGCCAGGACCCATTGACACATGGAGTGATTTCCTACTAGAAATGTTGAAAATGGAAGATGTGAGATCTACTAGTAAAGAGAGGTTTCATTTGTAG
Predicted protein sequences of Glyma19g05721
>Glyma19g05721.1   sequence type=predicted peptide   gene model=Glyma19g05721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLHIPLLRGNNSSKQTMSKVTMPILLAFFIFILTTISCSLLSYHSLLKINDEYKEPSFEFDDLIVPESLPSTPVNKCDIFTGDWVPNPEAPYYTNTTCWEIHEHQNCMKYGRPDTDFMKWRWKPNECELPIFNPFQFLQIMRGKSLAFVGDSIGRNHMQSMICLLSKVEWPIDVSYTDDFSFKRWKYSSYNFTMTTFWSPYLVRAKQVDSNGGLYNVYLDEFDEKWTTQIKEFDYVIINVGQWFLRPMVFYEKQKIVGCQYCSLENVTHLSWHYGYKKAFGTTFKAIINLENFKGVTFLRTFAPSHFENGVWDKGGNCVRTKPFKSNETRLEGNNLELHTIQLEQFKIAEKEARKKGLKFMLLDTTQAMLLRPDGHPNKYGHWPHENVTLFNDCVHWCLPGPIDTWSDFLLEMLKMEDVRSTSKERFHL*






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