Glyma19g05660 - SoyBase

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Report for Sequence Feature Glyma19g05660

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6235828
stop:	6242304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67180	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein \| chr1:25130099-25132169 FORWARD LENGTH=453	SoyBase	E_val: 5.00E-115	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR13561	Panther	DNA REPLICATION REGULATOR DPB11-RELATED	JGI		ISS
PTHR13561:SF17	Panther	OS08G0414200 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
UniRef100_B9SZR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SZR2_RICCO	SoyBase	E_val: 4.00E-133	ISS
UniRef100_I1N6L6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N6L6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g042100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05660

Limit To All Plant Sequences

>Glyma19g05660.1   sequence type=CDS   gene model=Glyma19g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAAGAACAATTTGAACTTCCTCATCAATCTCACGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCTACGGTGAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACAGGCTGGCGGCAATTACGTTGGTGCTATGTCGAAATCTATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATACATGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGCTACTGGAAGTTCCCCTTGTTCGAGCCAGTAGCCTGACAAAGAAAAAATTGGTCGGTGACAAGTTACATGCTACTGGGTCTGAAAGGAAAAATTCCGACTTCAGTTCTGGAGCCTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAGGGGAAAAAGGCATATTTGCAATGGTAAGGAAAACACTACTGTGGCTAGACCTTCTCGTAAAGGAAGAAGACTTGCGAGTGATCTTGTTGACAAAGTAGTGTTGGGTCCTTCGATTTTGGATTTAACCACAGATGACCACCTTTTTAGAATGGATAGCCAACAAACTGATGCCGAAGCTACCTCTAGCCTTTCTGTTGGTGTCAATAATAACATTATTCTACAAAATAGTGAAGGACCTAACGCAGGATTAAGTAATCAAAGTAGAACTATCATTGGTGGTTCAAATGATATTGAACAGATCAAAGATTCAAGTCATATATCTAAACCTAGAAATTCAACTTCATTTATTGAAGATCCCCTACCTGTGCCACAAACATCAATTGATTTATGTTCCAGTGATGATGAAAAGTTCACAGATGGTGATCAGGCTGATAATGTTGCTGGTTTACCTACTTCAACAGAGATGTCATGTGTAATATGTCTCACAGAATTCAGCTCAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGCTGATCATACGACTTCAATGAGAAAAACATCAACATGCCCTTTGTGCAAGGCAAGTTTTATGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGTTATTTTTATCCCCGTGGATCAAAATTTACCAGATAATATCTTTGAGTCTGCACAGTCAAATGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCACATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCATTATCGTAGTAATCACTTGTATTAG

Predicted protein sequences of Glyma19g05660

Limit To All Plant Sequences

>Glyma19g05660.1   sequence type=predicted peptide   gene model=Glyma19g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAEEQFELPHQSHDSPVQGMERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIHVVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGSERKNSDFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPSRKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQNSEGPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKFTDGDQADNVAGLPTSTEMSCVICLTEFSSTRGILPCGHRFCFPCIQNWADHTTSMRKTSTCPLCKASFMMIKKVEHAATADQKIYSQTIPCDNSASVIFIPVDQNLPDNIFESAQSNACVVCRGREPEDLLESCDVCHIRKIHSYCMDPPLRPWICTHCKELRMHYRSNHLY*

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