SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67180 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein | chr1:25130099-25132169 FORWARD LENGTH=453 | SoyBase | E_val: 5.00E-115 | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR13561 | Panther | DNA REPLICATION REGULATOR DPB11-RELATED | JGI | ISS | |
| PTHR13561:SF17 | Panther | OS08G0414200 PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF00533 | PFAM | BRCA1 C Terminus (BRCT) domain | JGI | ISS | |
| UniRef100_B9SZR2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SZR2_RICCO | SoyBase | E_val: 4.00E-133 | ISS |
| UniRef100_I1N6L6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N6L6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05660 not represented in the dataset |
Glyma19g05660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g042100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05660.1 sequence type=CDS gene model=Glyma19g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAGAAGAACAATTTGAACTTCCTCATCAATCTCACGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCTACGGTGAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACAGGCTGGCGGCAATTACGTTGGTGCTATGTCGAAATCTATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATACATGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGCTACTGGAAGTTCCCCTTGTTCGAGCCAGTAGCCTGACAAAGAAAAAATTGGTCGGTGACAAGTTACATGCTACTGGGTCTGAAAGGAAAAATTCCGACTTCAGTTCTGGAGCCTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAGGGGAAAAAGGCATATTTGCAATGGTAAGGAAAACACTACTGTGGCTAGACCTTCTCGTAAAGGAAGAAGACTTGCGAGTGATCTTGTTGACAAAGTAGTGTTGGGTCCTTCGATTTTGGATTTAACCACAGATGACCACCTTTTTAGAATGGATAGCCAACAAACTGATGCCGAAGCTACCTCTAGCCTTTCTGTTGGTGTCAATAATAACATTATTCTACAAAATAGTGAAGGACCTAACGCAGGATTAAGTAATCAAAGTAGAACTATCATTGGTGGTTCAAATGATATTGAACAGATCAAAGATTCAAGTCATATATCTAAACCTAGAAATTCAACTTCATTTATTGAAGATCCCCTACCTGTGCCACAAACATCAATTGATTTATGTTCCAGTGATGATGAAAAGTTCACAGATGGTGATCAGGCTGATAATGTTGCTGGTTTACCTACTTCAACAGAGATGTCATGTGTAATATGTCTCACAGAATTCAGCTCAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGCTGATCATACGACTTCAATGAGAAAAACATCAACATGCCCTTTGTGCAAGGCAAGTTTTATGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGTTATTTTTATCCCCGTGGATCAAAATTTACCAGATAATATCTTTGAGTCTGCACAGTCAAATGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCACATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCATTATCGTAGTAATCACTTGTATTAG
>Glyma19g05660.1 sequence type=predicted peptide gene model=Glyma19g05660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAEEQFELPHQSHDSPVQGMERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIHVVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGSERKNSDFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPSRKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQNSEGPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKFTDGDQADNVAGLPTSTEMSCVICLTEFSSTRGILPCGHRFCFPCIQNWADHTTSMRKTSTCPLCKASFMMIKKVEHAATADQKIYSQTIPCDNSASVIFIPVDQNLPDNIFESAQSNACVVCRGREPEDLLESCDVCHIRKIHSYCMDPPLRPWICTHCKELRMHYRSNHLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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