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Report for Sequence Feature Glyma19g05660

Feature Type:gene_model
Chromosome:Gm19
Start:6235828
stop:6242304
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67180AT Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein | chr1:25130099-25132169 FORWARD LENGTH=453 SoyBaseE_val: 5.00E-115ISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR13561Panther DNA REPLICATION REGULATOR DPB11-RELATED JGI ISS
PTHR13561:SF17Panther OS08G0414200 PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF00533PFAM BRCA1 C Terminus (BRCT) domain JGI ISS
UniRef100_B9SZR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SZR2_RICCO SoyBaseE_val: 4.00E-133ISS
UniRef100_I1N6L6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N6L6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g042100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g05660.1   sequence type=CDS   gene model=Glyma19g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAAGAACAATTTGAACTTCCTCATCAATCTCACGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCTACGGTGAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACAGGCTGGCGGCAATTACGTTGGTGCTATGTCGAAATCTATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATACATGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGCTACTGGAAGTTCCCCTTGTTCGAGCCAGTAGCCTGACAAAGAAAAAATTGGTCGGTGACAAGTTACATGCTACTGGGTCTGAAAGGAAAAATTCCGACTTCAGTTCTGGAGCCTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAGGGGAAAAAGGCATATTTGCAATGGTAAGGAAAACACTACTGTGGCTAGACCTTCTCGTAAAGGAAGAAGACTTGCGAGTGATCTTGTTGACAAAGTAGTGTTGGGTCCTTCGATTTTGGATTTAACCACAGATGACCACCTTTTTAGAATGGATAGCCAACAAACTGATGCCGAAGCTACCTCTAGCCTTTCTGTTGGTGTCAATAATAACATTATTCTACAAAATAGTGAAGGACCTAACGCAGGATTAAGTAATCAAAGTAGAACTATCATTGGTGGTTCAAATGATATTGAACAGATCAAAGATTCAAGTCATATATCTAAACCTAGAAATTCAACTTCATTTATTGAAGATCCCCTACCTGTGCCACAAACATCAATTGATTTATGTTCCAGTGATGATGAAAAGTTCACAGATGGTGATCAGGCTGATAATGTTGCTGGTTTACCTACTTCAACAGAGATGTCATGTGTAATATGTCTCACAGAATTCAGCTCAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGCTGATCATACGACTTCAATGAGAAAAACATCAACATGCCCTTTGTGCAAGGCAAGTTTTATGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGTTATTTTTATCCCCGTGGATCAAAATTTACCAGATAATATCTTTGAGTCTGCACAGTCAAATGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCACATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCATTATCGTAGTAATCACTTGTATTAG

>Glyma19g05660.1   sequence type=predicted peptide   gene model=Glyma19g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAEEQFELPHQSHDSPVQGMERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIHVVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGSERKNSDFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPSRKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQNSEGPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKFTDGDQADNVAGLPTSTEMSCVICLTEFSSTRGILPCGHRFCFPCIQNWADHTTSMRKTSTCPLCKASFMMIKKVEHAATADQKIYSQTIPCDNSASVIFIPVDQNLPDNIFESAQSNACVVCRGREPEDLLESCDVCHIRKIHSYCMDPPLRPWICTHCKELRMHYRSNHLY*







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