SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20000 | AT | Annotation by Michelle Graham. TAIR10: CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744 | SoyBase | E_val: 0 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0007276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamete generation | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010071 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root meristem specification | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0032875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048829 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root cap development | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005680 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anaphase-promoting complex | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0009504 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell plate | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1126 | KOG | DNA-binding cell division cycle control protein | JGI | ISS | |
| PTHR12558 | Panther | ANAPHASE PROMOTING COMPLEX SUBUNIT | JGI | ISS | |
| PTHR12558:SF22 | Panther | HBT (HOBBIT), BINDING | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7ZYJ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein-like protein n=2 Tax=Medicago truncatula RepID=G7ZYJ0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N6L5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6L5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05640 not represented in the dataset |
Glyma19g05640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g07140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g042200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05640.1 sequence type=CDS gene model=Glyma19g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAATACTCGTAGATTGCGTTCAAAAGAGTCTTCGCCATTTCATGCACTCCAACGCCATCTTCATCTCGCAGCGACTCTGTGCTCAGTTTCCCTCCGAGACAAATTTGCAATTGTTAGCTGGCTGTTATTTGCAGAGCAATCAAGCTTATTGTGCATACCATATCTTAAAGGGAGCCCAAACGGCTCAATCTCGGTACTTGTTTGCGTTATCATGCTTTCATATGGATCTTCTTAGTGAAGCTGAAGATGCATTATGTCATGCCGATGAGCCCGGTGCAGAGGTTCCAAATGGTGCAACTGGTCATTATCTATTAGGGCTCATTTACAGATGCACTGACAGAAGGAAAAATGCCATACAACATTTCAAGCAGGCACTCTCAATGGATCCTCTAATGTGGGCTGCATATGAGGAATTGTGTATATTAGGTGCTGCTGAAGAAGCAACTGTAGTTTTTGGTGAAGCAGCAGCTTTTTGCATACAAAAGCAATACCTCAATTGTTCAACCTCTCCAAACTCACATATGTCATCTGAACATACTAATGAAGTTGCTGCAAGACCTTGTATGTCTGAAGAAGCGAGTCCAAGGCAACTCAAACAAATGCAAGGTCTCAAGGATACTGCTGTATATCATCATGGAGCATCTATTTTAGGAGGAGCTGCTGGTCAACCTATTAATAGTGGTTCATCTAACATGTCATTTTATAACACCCCTTCTCCAATGGTTGCACAGTTGTCAAGTGTTGCTCCACCCCCATTGTGTAGGAACGTGCTGCCAAATGACCAAAATCTTACTACACTTGGTGCTGACAGTTCCCCTAAGTCAACAGTAAACTCTCCTATTCAAGCCCCTCGAAGAAAGTTTGTGGGTGAGGGAAAGTTACGAAAGATTTCAGGTAGATTATTTTCTGATTCTGGTCCTCGACGTACATCACGACTCTCTAGTGACTCAAGTGTAAACACAAATGCTAATTCAACTGTTGTATCTGGAAATGGAACTAATAACTCTTACAAGGGAGGTTCAAAGCTAAACCATATGGCATTTCGTACCATGGCAATTCGGAAAGGGCAGTCATGGGCCAATGAAAACATTGATGAAGGGATTCGTAATGATGTTCCGGATGATTCTTCTTTAAATAGTACATCTATAAATTCTTGTTCATCTCCTGTCATTGAAGCCAAATCTTATGAGCAAGAAGCAGCAACTTTTCAAATTGGTGGGCAAGTTACAAGTGGTTTTAAGGTCATCACTGGCGCTTCAGAAATATTAACCCTTCTAAGAGTTCTTGGTGAAGGCTATAGACTTTCCTGCTTATATAGGTGCCAGGATGCACTAGATACCTATCTGAAACTTCCACAGAAGCATTACAACACTGGCTGGGTTCTTTCTCAGGTTGGGAAAGCATACTTTGAGCTAGTTGATTATTTAGAAGCTGATCGTGCCTTTAGTCATGCTCGTCAGATTACACCTTATAGTTTGGAAGGAATGGATATACACTCAACAGTCCTTTATCATTTAAAGGAAGATATGAAGCTAAGTTACCTGGCACAGGAATTGATTTCAACTGATCGCTTAGCTCCTCAATCTTGGTGTGCCATGGGTAATTGCTACAGTCTACAGAAAGATCATGAAACGGCACTGAAGAATTTTCAACGGGCTGTTCAACTGAATCCCAGATTTGCATATGCACACACCCTATGCGGACATGAGTATGTTGCACTAGAAGATTTTGAAAATGGGATTAAGTGCTACCATAGTGCACTCAGGGTTGATTCAAGGCACTATAATGCATGGTATGGACTTGGAATGCTATATCTTCGCCAAGAGAAGTATGAGTTCTCTGAACATCATTTCCATATGGCCTACCAAATCAACCCACGATCTTCTGTCATATTGTCATACCTTGGAACTGCTTTGCATGCTTTAAAGAGAAGCGGGGAAGCATTGGCCATAATGGAGAAGGCTATTTTGGAAGATAAGAAAAATCCACTTCCCATGTATCAAAAAGCCAGCATACTCGTAAGCTTAGAAAGATTTGACGAGGCTTTGGATGTCCTAGAGGAGCTGAAAGAGGCACAACCTCGTGAAAGTAGTGTCTATGCTTTGATGGGCAATATCTATAGAAGGCGTCACATGCATGAGAGAGCAATGTTTCATTATGGTGTTGCTTTGGATTTGAAACCATCTGTAACAGATGCTGCTACCATTAAGGCTGCCGTTGAGAAATTGATTATACCTGATGAGTTCCAAGACGAAGACGACTCGTAG
>Glyma19g05640.1 sequence type=predicted peptide gene model=Glyma19g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAILVDCVQKSLRHFMHSNAIFISQRLCAQFPSETNLQLLAGCYLQSNQAYCAYHILKGAQTAQSRYLFALSCFHMDLLSEAEDALCHADEPGAEVPNGATGHYLLGLIYRCTDRRKNAIQHFKQALSMDPLMWAAYEELCILGAAEEATVVFGEAAAFCIQKQYLNCSTSPNSHMSSEHTNEVAARPCMSEEASPRQLKQMQGLKDTAVYHHGASILGGAAGQPINSGSSNMSFYNTPSPMVAQLSSVAPPPLCRNVLPNDQNLTTLGADSSPKSTVNSPIQAPRRKFVGEGKLRKISGRLFSDSGPRRTSRLSSDSSVNTNANSTVVSGNGTNNSYKGGSKLNHMAFRTMAIRKGQSWANENIDEGIRNDVPDDSSLNSTSINSCSSPVIEAKSYEQEAATFQIGGQVTSGFKVITGASEILTLLRVLGEGYRLSCLYRCQDALDTYLKLPQKHYNTGWVLSQVGKAYFELVDYLEADRAFSHARQITPYSLEGMDIHSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYAHTLCGHEYVALEDFENGIKCYHSALRVDSRHYNAWYGLGMLYLRQEKYEFSEHHFHMAYQINPRSSVILSYLGTALHALKRSGEALAIMEKAILEDKKNPLPMYQKASILVSLERFDEALDVLEELKEAQPRESSVYALMGNIYRRRHMHERAMFHYGVALDLKPSVTDAATIKAAVEKLIIPDEFQDEDDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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