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Report for Sequence Feature Glyma19g05640
Feature Type: gene_model
Chromosome: Gm19
Start: 6212949
stop: 6224589
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g05640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G20000 AT
Annotation by Michelle Graham. TAIR10: CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744
SoyBase E_val: 0 ISS
GO:0006312 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitotic recombination
SoyBase N/A ISS
GO:0007276 GO-bp
Annotation by Michelle Graham. GO Biological Process: gamete generation
SoyBase N/A ISS
GO:0007346 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle
SoyBase N/A ISS
GO:0009560 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0010071 GO-bp
Annotation by Michelle Graham. GO Biological Process: root meristem specification
SoyBase N/A ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0032875 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication
SoyBase N/A ISS
GO:0042023 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication
SoyBase N/A ISS
GO:0043161 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0043248 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome assembly
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0048829 GO-bp
Annotation by Michelle Graham. GO Biological Process: root cap development
SoyBase N/A ISS
GO:0051301 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell division
SoyBase N/A ISS
GO:0051302 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell division
SoyBase N/A ISS
GO:0051510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth
SoyBase N/A ISS
GO:0051788 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to misfolded protein
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005680 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anaphase-promoting complex
SoyBase N/A ISS
GO:0005819 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: spindle
SoyBase N/A ISS
GO:0009504 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell plate
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1126
KOG
DNA-binding cell division cycle control protein
JGI ISS
PTHR12558 Panther
ANAPHASE PROMOTING COMPLEX SUBUNIT
JGI ISS
PTHR12558:SF22 Panther
HBT (HOBBIT), BINDING
JGI ISS
PF00515 PFAM
Tetratricopeptide repeat
JGI ISS
UniRef100_G7ZYJ0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein-like protein n=2 Tax=Medicago truncatula RepID=G7ZYJ0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N6L5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6L5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g05640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g05640
Paralog Evidence Comments
Glyma13g07140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g05640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g042200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g05640
Coding sequences of Glyma19g05640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05640.1 sequence type=CDS gene model=Glyma19g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCAATACTCGTAGATTGCGTTCAAAAGAGTCTTCGCCATTTCATGCACTCCAACGCCATCTTCATCTCGCAGCGACTCTGTGCTCAGTTTCCCTCCGAGACAAATTTGCAATTGTTAGCTGGCTGTTATTTGCAGAGCAATCAAGCTTATTGTGCATACCATATCTTAAAGGGAGCCCAAACGGCTCAATCTCGGTACTTGTTTGCGTTATCATGCTTTCATATGGATCTTCTTAGTGAAGCTGAAGATGCATTATGTCATGCCGATGAGCCCGGTGCAGAGGTTCCAAATGGTGCAACTGGTCATTATCTATTAGGGCTCATTTACAGATGCACTGACAGAAGGAAAAATGCCATACAACATTTCAAGCAGGCACTCTCAATGGATCCTCTAATGTGGGCTGCATATGAGGAATTGTGTATATTAGGTGCTGCTGAAGAAGCAACTGTAGTTTTTGGTGAAGCAGCAGCTTTTTGCATACAAAAGCAATACCTCAATTGTTCAACCTCTCCAAACTCACATATGTCATCTGAACATACTAATGAAGTTGCTGCAAGACCTTGTATGTCTGAAGAAGCGAGTCCAAGGCAACTCAAACAAATGCAAGGTCTCAAGGATACTGCTGTATATCATCATGGAGCATCTATTTTAGGAGGAGCTGCTGGTCAACCTATTAATAGTGGTTCATCTAACATGTCATTTTATAACACCCCTTCTCCAATGGTTGCACAGTTGTCAAGTGTTGCTCCACCCCCATTGTGTAGGAACGTGCTGCCAAATGACCAAAATCTTACTACACTTGGTGCTGACAGTTCCCCTAAGTCAACAGTAAACTCTCCTATTCAAGCCCCTCGAAGAAAGTTTGTGGGTGAGGGAAAGTTACGAAAGATTTCAGGTAGATTATTTTCTGATTCTGGTCCTCGACGTACATCACGACTCTCTAGTGACTCAAGTGTAAACACAAATGCTAATTCAACTGTTGTATCTGGAAATGGAACTAATAACTCTTACAAGGGAGGTTCAAAGCTAAACCATATGGCATTTCGTACCATGGCAATTCGGAAAGGGCAGTCATGGGCCAATGAAAACATTGATGAAGGGATTCGTAATGATGTTCCGGATGATTCTTCTTTAAATAGTACATCTATAAATTCTTGTTCATCTCCTGTCATTGAAGCCAAATCTTATGAGCAAGAAGCAGCAACTTTTCAAATTGGTGGGCAAGTTACAAGTGGTTTTAAGGTCATCACTGGCGCTTCAGAAATATTAACCCTTCTAAGAGTTCTTGGTGAAGGCTATAGACTTTCCTGCTTATATAGGTGCCAGGATGCACTAGATACCTATCTGAAACTTCCACAGAAGCATTACAACACTGGCTGGGTTCTTTCTCAGGTTGGGAAAGCATACTTTGAGCTAGTTGATTATTTAGAAGCTGATCGTGCCTTTAGTCATGCTCGTCAGATTACACCTTATAGTTTGGAAGGAATGGATATACACTCAACAGTCCTTTATCATTTAAAGGAAGATATGAAGCTAAGTTACCTGGCACAGGAATTGATTTCAACTGATCGCTTAGCTCCTCAATCTTGGTGTGCCATGGGTAATTGCTACAGTCTACAGAAAGATCATGAAACGGCACTGAAGAATTTTCAACGGGCTGTTCAACTGAATCCCAGATTTGCATATGCACACACCCTATGCGGACATGAGTATGTTGCACTAGAAGATTTTGAAAATGGGATTAAGTGCTACCATAGTGCACTCAGGGTTGATTCAAGGCACTATAATGCATGGTATGGACTTGGAATGCTATATCTTCGCCAAGAGAAGTATGAGTTCTCTGAACATCATTTCCATATGGCCTACCAAATCAACCCACGATCTTCTGTCATATTGTCATACCTTGGAACTGCTTTGCATGCTTTAAAGAGAAGCGGGGAAGCATTGGCCATAATGGAGAAGGCTATTTTGGAAGATAAGAAAAATCCACTTCCCATGTATCAAAAAGCCAGCATACTCGTAAGCTTAGAAAGATTTGACGAGGCTTTGGATGTCCTAGAGGAGCTGAAAGAGGCACAACCTCGTGAAAGTAGTGTCTATGCTTTGATGGGCAATATCTATAGAAGGCGTCACATGCATGAGAGAGCAATGTTTCATTATGGTGTTGCTTTGGATTTGAAACCATCTGTAACAGATGCTGCTACCATTAAGGCTGCCGTTGAGAAATTGATTATACCTGATGAGTTCCAAGACGAAGACGACTCGTAG
Predicted protein sequences of Glyma19g05640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g05640.1 sequence type=predicted peptide gene model=Glyma19g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAILVDCVQKSLRHFMHSNAIFISQRLCAQFPSETNLQLLAGCYLQSNQAYCAYHILKGAQTAQSRYLFALSCFHMDLLSEAEDALCHADEPGAEVPNGATGHYLLGLIYRCTDRRKNAIQHFKQALSMDPLMWAAYEELCILGAAEEATVVFGEAAAFCIQKQYLNCSTSPNSHMSSEHTNEVAARPCMSEEASPRQLKQMQGLKDTAVYHHGASILGGAAGQPINSGSSNMSFYNTPSPMVAQLSSVAPPPLCRNVLPNDQNLTTLGADSSPKSTVNSPIQAPRRKFVGEGKLRKISGRLFSDSGPRRTSRLSSDSSVNTNANSTVVSGNGTNNSYKGGSKLNHMAFRTMAIRKGQSWANENIDEGIRNDVPDDSSLNSTSINSCSSPVIEAKSYEQEAATFQIGGQVTSGFKVITGASEILTLLRVLGEGYRLSCLYRCQDALDTYLKLPQKHYNTGWVLSQVGKAYFELVDYLEADRAFSHARQITPYSLEGMDIHSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYAHTLCGHEYVALEDFENGIKCYHSALRVDSRHYNAWYGLGMLYLRQEKYEFSEHHFHMAYQINPRSSVILSYLGTALHALKRSGEALAIMEKAILEDKKNPLPMYQKASILVSLERFDEALDVLEELKEAQPRESSVYALMGNIYRRRHMHERAMFHYGVALDLKPSVTDAATIKAAVEKLIIPDEFQDEDDS*