Glyma19g05630 - SoyBase

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Report for Sequence Feature Glyma19g05630

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6184450
stop:	6185859
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38530	AT	Annotation by Michelle Graham. TAIR10: tryptophan synthase beta type 2 \| chr5:15424097-15426294 FORWARD LENGTH=506	SoyBase	E_val: 2.00E-139	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004834	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0052684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	SoyBase	N/A	ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF21	Panther	TRYPTOPHAN SYNTHASE BETA CHAIN	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_I1N6L4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N6L4_SOYBN	SoyBase	E_val: 4.00E-178	ISS
UniRef100_Q9FFW8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tryptophan synthase beta chain n=1 Tax=Arabidopsis thaliana RepID=Q9FFW8_ARATH	SoyBase	E_val: 8.00E-137	ISS

Expression Patterns of Glyma19g05630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05630

Paralog	Evidence	Comments
Glyma13g07130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g042400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05630

Limit To All Plant Sequences

>Glyma19g05630.1   sequence type=CDS   gene model=Glyma19g05630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTAAAACTAGGCATAACCATATCAGAAGCTGTGGAGGTTGCTGCTAAAAATGCTTATAGCAAGTACTGCTTACACAATCATATTCTACTCCACCATAGTGTTATAGGAGAAGAATGGATCAAACAAATGGAAGCTATTGGGGAAACCCCAGATGTCATTAAAGGATGTACTGGTGGTGGCTCCAACTTCGCAGGGCTTAGTTTCCCGTTCCTTCGAGAGAAGCTCAATAAGAAAATCAATCCTGTTATAAGAGCAGTTGAACCTGCAGCATGTCCTTCATTAACAAAAGGGGTATATACTTATGATTATGGTGATACTGCAGGAATGACTCCATTGATAAAAATGCACACACTTGGACACGACTTTGTTCCGGATCCAATTCATGCTGGGGGTTTGCGTTACCACGGTATGGCACCATTGATCTCACATGTTTTTGACTTGGGTTTAATGGAAGCAATTGCAATTCCACAAACAGAATGCTTAGGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAACCGGAGAGGCCAAGGTTATTCTGACAGCAATGTGTGGACATGGCCATTTTGATCTGCCAGCTTATGAAAAGTACTTGCAAGGTAACATGGTTGACCTCTCATTCTCAGAAGACAAGATGAAAGCTTCACTGGCCAATATTCCTCAAGTGACTGCTTACCTGAGTTGA

Predicted protein sequences of Glyma19g05630

Limit To All Plant Sequences

>Glyma19g05630.1   sequence type=predicted peptide   gene model=Glyma19g05630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLKLGITISEAVEVAAKNAYSKYCLHNHILLHHSVIGEEWIKQMEAIGETPDVIKGCTGGGSNFAGLSFPFLREKLNKKINPVIRAVEPAACPSLTKGVYTYDYGDTAGMTPLIKMHTLGHDFVPDPIHAGGLRYHGMAPLISHVFDLGLMEAIAIPQTECLGAIQFARSEGLIPASEPTHAIAATIREAIRCRETGEAKVILTAMCGHGHFDLPAYEKYLQGNMVDLSFSEDKMKASLANIPQVTAYLS*

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