Report for Sequence Feature Glyma19g05600
Feature Type: gene_model
Chromosome: Gm19
Start: 6149750
stop: 6152609
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g05600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G14470 AT
Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054
SoyBase E_val: 1.00E-81 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0009697 GO-bp
Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043531 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ADP binding
SoyBase N/A ISS
KOG4658
KOG
Apoptotic ATPase
JGI ISS
PTHR23155 Panther
LEUCINE-RICH REPEAT-CONTAINING PROTEIN
JGI ISS
PTHR23155:SF42 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00931 PFAM
NB-ARC domain
JGI ISS
UniRef100_G7K2V1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Resistance protein n=1 Tax=Medicago truncatula RepID=G7K2V1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N6L2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6L2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g05600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g05600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g042600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g05600
Coding sequences of Glyma19g05600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05600.2 sequence type=CDS gene model=Glyma19g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAAGCTTGACAGCATGTTCACTGCAATCAAGGCTACACTTCATGATGCTGAGACGAAACAGTTCTCAGATGAAGCTATAAAGAATTGGTTTGTGCCTATGAAAAACCAGGGCTGGAGTTCCAAGGAATCAATCTATGGAAGAGAAAAAGAAAAGAATAAAATTGTAGACTTTTTGGTCGGTAATGCTTCTCATGCTGAGGATTTATTAGTCTATCCAATCATAGGACAAGGCGGACTTGGAAAAACAACACTGGCCCAACTCGCCTTCAATCGCGAGAGGGTAGCAAAACACTTTGAGCTAAGAATTTGGGTATGCGTTTCAGAAGATTTTAGTTTGAAGAGAATGACAAAAGCTATCATCGAAGCAGCATCTGGATGTGCTTGTGATGATTTGGATCTAGAGCCACTACAAAAAAAACTTCAAGATTTGCTTCAAAGAAAAAGATATTTTCTTATTTTGGATGATGTGTGGAATGATGAGCAAGAGAATTGGCAGCGGTTAAAATCAGTTTTGGCTTGTGGGGCCAAGGGTGCTTCCATTTTAGTAACTACTCATCTTTCAAGTGTTGCAACAATCATGGGAACAACTCCTCCTCATGAATTATCAATGATGCCCAAAAAAAATTGTTGGGAATTGTTTAAGCACCGAGCCTTTGGACCAGATGAGGTAATGCAAGTAGAGCTTGAAGTCATAGGGAAGGAGATAGTAAAGAAGTGTGGGGGAGTACCTCTTGCAGCAAAGGCACTAGGAAGTCTTTTATGCTTTGAAAGAAAGGAAGAAGCATGGCTCAATGTTAAGGAAAACAACCTGTGGAGTTCATCACATGATATAATGCCTGCCCTAAGTTTAAGTTACTTGAACTTACCAATAAAACTAAGACAATGTTTTGCTTATTATGGAAAGTTGGATGTTGAAGATGTTGGGGACAGTGTGTGGCATGAATTACATTGGAGATCATTTTTTCAGGATCTTGAGACAGATGAATTGGGTAAAGTTACAAGTTTCAAGTTGCATGATCTTGCACAATTTGTTGCCAAAGAGATTTGTTGCGTGACAAAAGACAATGATGTTACTACTTTCTCTGAAAGAATCCACCATCTCTTAGAGCATAGGTGGCAAACAAATGTGATCCAAATACTTGAAGTGAAATCATTGAGAAGCTGCATAATGCTATATGATAGGCGTGGTTGTTCTTTTTTTTTTTCTCGTGTGTTGAAATGTTATTCTTTGCGGGTGCTTGACTTTGTAAATAGACAAGAACTGTTTTCTTCAATTAGTCATTTAAAGCATCTAAGGTACTTAAATCTTTGTCAAGATACTTTCAAAACTCTTCCAAAGTCATTATGTAAATTGTGGAATTTACAAATATTGAAATTAGACGGTTGTGCATATCTCCAAAAGTTGCCTAGCAAGTTGATACAGTTAAAAGCTCTACAACAACTATCTTTGATTGATTGGAAGTTGACTTCTTTAAGGAGTTTAACCATGTACTTTGTTGGCAAGAAAAGAGGGTTCCGTTTGGCAGAATTGGGAGCCCTGAAGCTTAAAGGATGTCTTCACATCAAACATCTAGAGAGAGTAAAAAGTGTAACGGATGCCAAAGAAGCCAATATGCCAAGCAAGAAATTGAAGCAGTTGTGGTTGTCCTGGGACTTGTCATGGGCCAAAAATCATCCGTCCGAATTGCAAGAAAATTTTGAACAGATTCTGGATGTGCTTCAACCTCATACCCAACAACTTCTAACTTTGGGCATGATAAGATATAAGGGTGTCCATTTCCCACAATGGATATCTAGTGCTTCTCTCAAATCTTTGTCACTCAATTGTTTGCCAAACCTAATAAGGTTATCAAGGGAGGATGGGGAAAACATGTCCCGAGGCCTTTCCATACTTGAAATTACTCAATGTCCTAAATTGTTGGGTTTGCCTTGCCTTCCATCTATCAATGATCTACGTATAGAAGGGAAATGCAACCAAGATTTTCTAGGTTCAATTCATAAACTTGGTAGTCTTAAATCCCTGCGGTTCATATATAATGACAAGTTAACTTGCTTTCCAGATGAGATGCTACAAAACCTTACTTCTCTAAAGATGCTAGAATTTTGCAGGCTCTACAAACTTAAGTTCCATGTGTCAACAGGTTTTCAACACCTAACTTGTCTTGAAGATTTGAGGATTAGAAGATGCAGAGAGATGGAAGGTTTTCAATATGCTTTACAACACATGATTGCACTCAAGAAGTTAGAATTAATCTATCTTCCAAACCTAGAATCTTTGCCTGACTGCTTTGGACACCTTTCCAATCTTTGCCTGAATGCTTTGGACACCTTGCCAATCTTTGCTATTTAT
Predicted protein sequences of Glyma19g05600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g05600.2 sequence type=predicted peptide gene model=Glyma19g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEKLDSMFTAIKATLHDAETKQFSDEAIKNWFVPMKNQGWSSKESIYGREKEKNKIVDFLVGNASHAEDLLVYPIIGQGGLGKTTLAQLAFNRERVAKHFELRIWVCVSEDFSLKRMTKAIIEAASGCACDDLDLEPLQKKLQDLLQRKRYFLILDDVWNDEQENWQRLKSVLACGAKGASILVTTHLSSVATIMGTTPPHELSMMPKKNCWELFKHRAFGPDEVMQVELEVIGKEIVKKCGGVPLAAKALGSLLCFERKEEAWLNVKENNLWSSSHDIMPALSLSYLNLPIKLRQCFAYYGKLDVEDVGDSVWHELHWRSFFQDLETDELGKVTSFKLHDLAQFVAKEICCVTKDNDVTTFSERIHHLLEHRWQTNVIQILEVKSLRSCIMLYDRRGCSFFFSRVLKCYSLRVLDFVNRQELFSSISHLKHLRYLNLCQDTFKTLPKSLCKLWNLQILKLDGCAYLQKLPSKLIQLKALQQLSLIDWKLTSLRSLTMYFVGKKRGFRLAELGALKLKGCLHIKHLERVKSVTDAKEANMPSKKLKQLWLSWDLSWAKNHPSELQENFEQILDVLQPHTQQLLTLGMIRYKGVHFPQWISSASLKSLSLNCLPNLIRLSREDGENMSRGLSILEITQCPKLLGLPCLPSINDLRIEGKCNQDFLGSIHKLGSLKSLRFIYNDKLTCFPDEMLQNLTSLKMLEFCRLYKLKFHVSTGFQHLTCLEDLRIRRCREMEGFQYALQHMIALKKLELIYLPNLESLPDCFGHLSNLCLNALDTLPIFAIY
SoyBase
SoyBase transitions to NEW site on 10/1/2024
