SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g05580

Feature Type:gene_model
Chromosome:Gm19
Start:6108436
stop:6112277
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38710AT Annotation by Michelle Graham. TAIR10: Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476 SoyBaseE_val: 0ISS
GO:0006537GO-bp Annotation by Michelle Graham. GO Biological Process: glutamate biosynthetic process SoyBaseN/AISS
GO:0006562GO-bp Annotation by Michelle Graham. GO Biological Process: proline catabolic process SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004657GO-mf Annotation by Michelle Graham. GO Molecular Function: proline dehydrogenase activity SoyBaseN/AISS
KOG0186 KOG Proline oxidase JGI ISS
PTHR13914Panther PROLINE OXIDASE JGI ISS
PF01619PFAM Proline dehydrogenase JGI ISS
UniRef100_Q6RUF9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Proline dehydrogenase n=1 Tax=Glycine max RepID=Q6RUF9_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233E8F5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E8F5 related cluster n=1 Tax=unknown RepID=UPI000233E8F5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g05580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g042900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g05580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05580
>Glyma19g05580.1   sequence type=CDS   gene model=Glyma19g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCCGGGTGATCCCTCCGAGAATGATCCTCAAGAACATCCGTTACAACACCGCAACAAAGCCACTCAAAACCACTCACCCATCCCTCTCTCCTGTCACCGCTACCGCATCACTCGTCAAGAAGCCGTCGTCTCCTGCTACGGATGCTTGGGCATCATTTGCCCAAGCATCCGTAACAACGGAGACGGCGGCCCTGAATTTGGAGGACGCGGAGCAGCTGTTCGCGTCGGTGTCGACGCGAAAATTGCTCCAGTCCTCTGCAGTTATGCATGCGACAGCTGTGGGGCCCGTGGTGGACCTGGGAATGAGGGTGATGAAGTCTCGGGTGTTCCAGAGCGGGGTGCTGAGGAATCTCCTCATGGCTGCCACGAAAGAGACGTTCTACGCGCAATTCTGCGCCGGCGAGGACGCCGCCACCGCCGGACGGAGCATCAGCGCGCTCAACGAGGTCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCACATGAAAACGATGGGTGTGACAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGCTTTGTCATTGTGAAAATCACTGCAATATGTCCCATGGCATTGCTAGAGAGAATGAGTGACCTTCTAAGATGGCAACAAAGAGACCCTTCATTCGTTTTGCCATGGAAGCAAGATTCCCTCCCAATTTTTGCGGAATCTAGCCCTTTGTACCACACACAGAAGAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAAAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAACATGCCTTTGTTGGTTGATGCAGAACACACCACGGTTCAACCGGCTATCGATTACTTCACATACTCTTCTGCCATTAGGCACAACAAGGATGACAACCCCATTGTGTTTGGAACTATTCAGACTTATTTGAAAGATGCTAAGGAGAGGTTGTTGCTGGCAACAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGATTCAAATTGGTGAGGGGTGCCTACATGTCCATAGAGAGTAAATTGGCTGAGTCGTTTGGGTATGCATCCCCAGTTCACAATACTATTCAGGACACACACAATTGCTTCAATGACTGCTCATCATTTATGCTTGAGAAGATTGCTAATGGAATCGGTTCAGTTGTTCTTGCAACCCACAATATTGAATCAGGAAAATTGGCTGTGGCAAAGGCACATGAATTGGGTGTCGGTAAGGTGAACCACAAGCTAGAATTTGCACAATTATATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAACAATGAAGGATTTCAAGTAAGCAAATATATGCCATTTGGACCCGTAGATATGGTTATGCCTTACCTCCTGAGAAGGGCTGAAGAGAATAGAGGACTCTTGGCTGCTTCAGGTTTTGATAGGCAACTAATGAGAAAGGAGTTGGCAAGAAGACTAAAAGCTGCAGTGTTCTAA
Predicted protein sequences of Glyma19g05580
>Glyma19g05580.1   sequence type=predicted peptide   gene model=Glyma19g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRVIPPRMILKNIRYNTATKPLKTTHPSLSPVTATASLVKKPSSPATDAWASFAQASVTTETAALNLEDAEQLFASVSTRKLLQSSAVMHATAVGPVVDLGMRVMKSRVFQSGVLRNLLMAATKETFYAQFCAGEDAATAGRSISALNEVGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERMSDLLRWQQRDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSAIRHNKDDNPIVFGTIQTYLKDAKERLLLATKAAEKMGVPMGFKLVRGAYMSIESKLAESFGYASPVHNTIQDTHNCFNDCSSFMLEKIANGIGSVVLATHNIESGKLAVAKAHELGVGKVNHKLEFAQLYGMSEALSFGLNNEGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMRKELARRLKAAVF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo