|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G38710 | AT | Annotation by Michelle Graham. TAIR10: Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476 | SoyBase | E_val: 0 | ISS |
GO:0006537 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate biosynthetic process | SoyBase | N/A | ISS |
GO:0006562 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline catabolic process | SoyBase | N/A | ISS |
GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0004657 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proline dehydrogenase activity | SoyBase | N/A | ISS |
KOG0186 | KOG | Proline oxidase | JGI | ISS | |
PTHR13914 | Panther | PROLINE OXIDASE | JGI | ISS | |
PF01619 | PFAM | Proline dehydrogenase | JGI | ISS | |
UniRef100_Q6RUF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proline dehydrogenase n=1 Tax=Glycine max RepID=Q6RUF9_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_UPI000233E8F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E8F5 related cluster n=1 Tax=unknown RepID=UPI000233E8F5 | SoyBase | E_val: 0 | ISS |
Glyma19g05580 not represented in the dataset |
Glyma19g05580 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.19g042900 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05580.1 sequence type=CDS gene model=Glyma19g05580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACCCGGGTGATCCCTCCGAGAATGATCCTCAAGAACATCCGTTACAACACCGCAACAAAGCCACTCAAAACCACTCACCCATCCCTCTCTCCTGTCACCGCTACCGCATCACTCGTCAAGAAGCCGTCGTCTCCTGCTACGGATGCTTGGGCATCATTTGCCCAAGCATCCGTAACAACGGAGACGGCGGCCCTGAATTTGGAGGACGCGGAGCAGCTGTTCGCGTCGGTGTCGACGCGAAAATTGCTCCAGTCCTCTGCAGTTATGCATGCGACAGCTGTGGGGCCCGTGGTGGACCTGGGAATGAGGGTGATGAAGTCTCGGGTGTTCCAGAGCGGGGTGCTGAGGAATCTCCTCATGGCTGCCACGAAAGAGACGTTCTACGCGCAATTCTGCGCCGGCGAGGACGCCGCCACCGCCGGACGGAGCATCAGCGCGCTCAACGAGGTCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCACATGAAAACGATGGGTGTGACAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGCTTTGTCATTGTGAAAATCACTGCAATATGTCCCATGGCATTGCTAGAGAGAATGAGTGACCTTCTAAGATGGCAACAAAGAGACCCTTCATTCGTTTTGCCATGGAAGCAAGATTCCCTCCCAATTTTTGCGGAATCTAGCCCTTTGTACCACACACAGAAGAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAAAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAACATGCCTTTGTTGGTTGATGCAGAACACACCACGGTTCAACCGGCTATCGATTACTTCACATACTCTTCTGCCATTAGGCACAACAAGGATGACAACCCCATTGTGTTTGGAACTATTCAGACTTATTTGAAAGATGCTAAGGAGAGGTTGTTGCTGGCAACAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGATTCAAATTGGTGAGGGGTGCCTACATGTCCATAGAGAGTAAATTGGCTGAGTCGTTTGGGTATGCATCCCCAGTTCACAATACTATTCAGGACACACACAATTGCTTCAATGACTGCTCATCATTTATGCTTGAGAAGATTGCTAATGGAATCGGTTCAGTTGTTCTTGCAACCCACAATATTGAATCAGGAAAATTGGCTGTGGCAAAGGCACATGAATTGGGTGTCGGTAAGGTGAACCACAAGCTAGAATTTGCACAATTATATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAACAATGAAGGATTTCAAGTAAGCAAATATATGCCATTTGGACCCGTAGATATGGTTATGCCTTACCTCCTGAGAAGGGCTGAAGAGAATAGAGGACTCTTGGCTGCTTCAGGTTTTGATAGGCAACTAATGAGAAAGGAGTTGGCAAGAAGACTAAAAGCTGCAGTGTTCTAA
>Glyma19g05580.1 sequence type=predicted peptide gene model=Glyma19g05580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRVIPPRMILKNIRYNTATKPLKTTHPSLSPVTATASLVKKPSSPATDAWASFAQASVTTETAALNLEDAEQLFASVSTRKLLQSSAVMHATAVGPVVDLGMRVMKSRVFQSGVLRNLLMAATKETFYAQFCAGEDAATAGRSISALNEVGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERMSDLLRWQQRDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSAIRHNKDDNPIVFGTIQTYLKDAKERLLLATKAAEKMGVPMGFKLVRGAYMSIESKLAESFGYASPVHNTIQDTHNCFNDCSSFMLEKIANGIGSVVLATHNIESGKLAVAKAHELGVGKVNHKLEFAQLYGMSEALSFGLNNEGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMRKELARRLKAAVF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||