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Report for Sequence Feature Glyma19g05570
Feature Type: gene_model
Chromosome: Gm19
Start: 6087842
stop: 6091946
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g05570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G38710 AT
Annotation by Michelle Graham. TAIR10: Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476
SoyBase E_val: 0 ISS
GO:0006537 GO-bp
Annotation by Michelle Graham. GO Biological Process: glutamate biosynthetic process
SoyBase N/A ISS
GO:0006562 GO-bp
Annotation by Michelle Graham. GO Biological Process: proline catabolic process
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0006970 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to osmotic stress
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009695 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0009863 GO-bp
Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0010583 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0004657 GO-mf
Annotation by Michelle Graham. GO Molecular Function: proline dehydrogenase activity
SoyBase N/A ISS
KOG0186
KOG
Proline oxidase
JGI ISS
PTHR13914 Panther
PROLINE OXIDASE
JGI ISS
PF01619 PFAM
Proline dehydrogenase
JGI ISS
UniRef100_I1N6K9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6K9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q6RUF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Proline dehydrogenase n=1 Tax=Glycine max RepID=Q6RUF9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g05570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g05570
Paralog Evidence Comments
Glyma13g07110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g05570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g043000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g05570
Transcripts of Glyma19g05570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05570.2 sequence type=transcript gene model=Glyma19g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTACTATTCAAGGAAAAGTAAGAAAATGATTATTGTTTACTAAAAATAAAAAAGGATAACCCAAGTTGACCACTCTAATCTTATCACGCACACCCTTACACGATGCAACTTACCCAACTTAAACGTTCTAGTGTTGTACTTTCCTTACTTAACCCGACCCATTTCCTCACCTTCGCGCTATAAATCATATCACATCTTCCACCATTTAGAACAACATAACATAAGAAAAACACACACACAAACACCCTTTGAGTTCATTAACCTCTTCAGAAAAAACAACAACAACAACAAAAAAAAACATCATCATCAAAAAAACTTCCGAGAGTTTAATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGAAAGGAGTTGGGAAGAAGATTAAAAGCTGCAATGTTCTAAATTTGTCAGAAATCAGGATTCATTGACTTTTTGTACAAATTAGAGAGTTTTGTAATGTGAAGAAATTGTGCATTCAATCAAATGAAATTCTGCTTTGTTATGTAGGTTTTGTTGGAAATGCAACGGATCTTTTGTGTTGAGCAATAAACTTATGCTTAAATTGGGAAAGTGTAAAACCAGGTTAGAAAAATGAGTAAGAAAAACAAGAATAGTTTTTAAGTCATGGGTTGTCCAAGTTTCTCAATGTAGCTTTAAGTCAAGTTAATTAATTA
Coding sequences of Glyma19g05570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g05570.1 sequence type=CDS gene model=Glyma19g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGGTAA
>Glyma19g05570.2 sequence type=CDS gene model=Glyma19g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGAAAGGAGTTGGGAAGAAGATTAAAAGCTGCAATGTTCTAA
Predicted protein sequences of Glyma19g05570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g05570.1 sequence type=predicted peptide gene model=Glyma19g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATRVIPPRILKKLRYNTTTKPLNAAHPSISPVIAPPSLFERSPSPVADAVSTTSTTMETANLNLDDAERLFASVSTEKLLRSSAVLHATAVGPMVDLGMWLMKSPVFQTGLPKDLIMAATKETFFSHFCAGEDAAAAGRSISALKEAGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMTLLERMSDLLRWQQKDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSSIRHNKDDNPIVFGTIQTYLKDAKERLLLTTKAAEKMGVPLGFKLVRGAYMSTESKLAESFGYASPIHNTIQETHNCFNGCSSFLLEKIANGPGSISVVLATHNIESGKLAAAKAYELGVGKVNHKLEFAQLYGMSEALSFGLSNAGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMR*
>Glyma19g05570.2 sequence type=predicted peptide gene model=Glyma19g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATRVIPPRILKKLRYNTTTKPLNAAHPSISPVIAPPSLFERSPSPVADAVSTTSTTMETANLNLDDAERLFASVSTEKLLRSSAVLHATAVGPMVDLGMWLMKSPVFQTGLPKDLIMAATKETFFSHFCAGEDAAAAGRSISALKEAGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMTLLERMSDLLRWQQKDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSSIRHNKDDNPIVFGTIQTYLKDAKERLLLTTKAAEKMGVPLGFKLVRGAYMSTESKLAESFGYASPIHNTIQETHNCFNGCSSFLLEKIANGPGSISVVLATHNIESGKLAAAKAYELGVGKVNHKLEFAQLYGMSEALSFGLSNAGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMRKELGRRLKAAMF*