Glyma19g05550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g05550

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6068202
stop:	6071303
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15870	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase family 81 protein \| chr5:5182641-5184878 REVERSE LENGTH=745	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016998	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
KOG2254	KOG	Predicted endo-1,3-beta-glucanase	JGI		ISS
PF03639	PFAM	Glycosyl hydrolase family 81	JGI		ISS
UniRef100_A0EJF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucan-binding protein 4 n=1 Tax=Medicago truncatula RepID=A0EJF3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E8F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8F2 related cluster n=1 Tax=unknown RepID=UPI000233E8F2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g043200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05550

Limit To All Plant Sequences

>Glyma19g05550.2   sequence type=CDS   gene model=Glyma19g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAAAAACTTAGACGCAAGGTTAGCACAGCTCTCGCAGGTGGCTCGAGAAAAGGCTCCAAACCCTATAAAAACACAACCTTCAAAATCAAAACCCCATCACCATCCCCATCACCATCAACCCCATCACAACTTCCATCACCACCACGAAGATCAACAATGTCTCACACCAGAAAGCACACTCCTTTTCTGTTCCCCCATGTTGATTCCACTGTTGTCCCTGAACCCTCCAATTTCTTCTCCTCAAACCTTGTCTCAAATCCACTCCCCACAAACTCCTTCTTCCAAAACTTTGTCCTCAAAAACGGTGACCAACCTGAATACATTCACCCTTACCTCATCAAATCCTCAAACTCTTGTCTTTCCCTCTCATACCCATCTCGCTTCATGAACCCCTCCTTCATCTACCAAGTCTTCAACCCTGATCTTACCATCTCTTCCTCTCAAAAATCCCACCCTTCCCATTTGAACCACACCATCTCTTCCCACAATGATCTCAGTGTTACATTGGATATCCCTTCTTCCAATTTGAGGTTTTTCCTTGTTCGGGGAAGCCCCTTTTTGACCCTCTCTGTGACTCAACCAACCCCTCTTTCCATCACCACAATCCATGCAATTCTCTCCTTTACCTCAAGTGAGTCACTCACCAAACACACTTTCCATCTTAACAATGGCCAGACTTGGTTTTTGTATGCTTCTTCACCGATCAGGTTGAGTCATGGACTCTCTGAGATAACTTCTGATGCCTTTTCTGGCATAATTAGGATTGCCCTTTTGCCTGGTTCTGATTGGAAGCATGAGGCTGTGCTTGACAGGTTCAGTTCTTGTTACCCTGTGAGTGGTGAGGCTGTGTTTGCAAGACCCTTTTGTGTGGAGTATAAGTGGGAGAAGAGAGGGTGGGGTGATTTGTTGATGTTGGCACACCCTCTCCATATTCAGCTTTTGGCTGATAGTGGCAGCGAAGATGTTAGTGTTTTGAGTGATTTTAAGTATGGGAGCATTGATGGGGAGCTCGTTGGGGTTGTTGGGGATTCTTGGCTTTTGAAAACTGATCCTGTTTCTGTGACTTGGCATTCTGTTAGAGGTGTGAGGGAAGAATCCCGGGATGAGGTTGTTTCGGCGCTTGTGAACGATGTCGAGGGGCTGAATTCTTCGGCAATAGCGACAAATTCGTCGTATTTTTATGGGAAATTGGTTGCAAGGGCTGCAAGGTTTGCTTTGATAGCTGAGGAGGTGTGTTTTCTTGATGTGATTCCCAAGGTTAGAAAGTATTTGAAGGAAACCATCGAGCCGTGGCTGGAGGGGACTTTTAATGGGAATGGATTTCTGTATGATAGGAAATGGGGTGGCATTGTCACCAAACAAGGATCTACTGATGCTGGTGCTGATTTTGGGTTTGGAGTTTACAATGATCACCATTATCATTTGGGGTACTTCCTTTATGGAATTGCAGTGCTTGCTAAGATTGATCCGGTGTGGGGTAGGAAGTATAAGCCTCAAGCCTATTCACTAATGGCAGATTTTATGACCTTGAGCAGAAGATCAAACTCAAATTACACAAGACTGAGGTGCTTTGACCTTTATAAACTCCACTCATGGGCTGGAGGGTTAACTGAGTTTGGAGATGGAAGAAATCAGGAGAGTACTAGTGAAGCTGTTAATGCATATTATTCTGCTGCCTTGATGGGTCTGGCGTATGGTGACACGCATCTTGTTGCCATTGGATCAACACTCACAGCATTGGAAATTCATGCAGCTCAAATGTGGTGGCATGTGCAAGAGGGAGATAATCAGTATGATCAAGATTTTGTAAAAGAGAACAAGGTAGTTGGTGTTCTTTGGGCAAATAAGAGGGATAGTGGACTATGGTTTGCGCCTCCTGAGTGGAGAGAATGTAGGCTCGGCATTCAACTCTTACCAATACTGCCTATTTCTGAAGTCTTGTTTTCCAATGTTGATTTTGTGAAGGAGCTTGTGGAGTGGACATTGCCTGCTTTGAATAGGGAAGGTGTTGGAGAAGGATGGAAGGGGTTTGTCTATGCTCTGCAGGGTATTTATGACAATGAAGGTGCAATGCAGAAGATAAGAAGGTTAAATGGATTTGATGATGGAAACTCATTGACTAATCTCTTGTGGTGGATTCATAGCAGATCTGATAAAGAGGAATTTGGTCATGAAAAAATCTGCTGGTTTGGTCATTACTGCCACTAG

Predicted protein sequences of Glyma19g05550

Limit To All Plant Sequences

>Glyma19g05550.2   sequence type=predicted peptide   gene model=Glyma19g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKKLRRKVSTALAGGSRKGSKPYKNTTFKIKTPSPSPSPSTPSQLPSPPRRSTMSHTRKHTPFLFPHVDSTVVPEPSNFFSSNLVSNPLPTNSFFQNFVLKNGDQPEYIHPYLIKSSNSCLSLSYPSRFMNPSFIYQVFNPDLTISSSQKSHPSHLNHTISSHNDLSVTLDIPSSNLRFFLVRGSPFLTLSVTQPTPLSITTIHAILSFTSSESLTKHTFHLNNGQTWFLYASSPIRLSHGLSEITSDAFSGIIRIALLPGSDWKHEAVLDRFSSCYPVSGEAVFARPFCVEYKWEKRGWGDLLMLAHPLHIQLLADSGSEDVSVLSDFKYGSIDGELVGVVGDSWLLKTDPVSVTWHSVRGVREESRDEVVSALVNDVEGLNSSAIATNSSYFYGKLVARAARFALIAEEVCFLDVIPKVRKYLKETIEPWLEGTFNGNGFLYDRKWGGIVTKQGSTDAGADFGFGVYNDHHYHLGYFLYGIAVLAKIDPVWGRKYKPQAYSLMADFMTLSRRSNSNYTRLRCFDLYKLHSWAGGLTEFGDGRNQESTSEAVNAYYSAALMGLAYGDTHLVAIGSTLTALEIHAAQMWWHVQEGDNQYDQDFVKENKVVGVLWANKRDSGLWFAPPEWRECRLGIQLLPILPISEVLFSNVDFVKELVEWTLPALNREGVGEGWKGFVYALQGIYDNEGAMQKIRRLNGFDDGNSLTNLLWWIHSRSDKEEFGHEKICWFGHYCH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain