Glyma19g05460 - SoyBase

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Report for Sequence Feature Glyma19g05460

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5940293
stop:	5945061
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02420	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr3:496179-498772 REVERSE LENGTH=348	SoyBase	E_val: 2.00E-175	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4002	KOG	Uncharacterized integral membrane protein	JGI		ISS
PF03661	PFAM	Uncharacterised protein family (UPF0121)	JGI		ISS
UniRef100_C6TKR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TKR4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M898	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g02420/F16B3_5 n=1 Tax=Arabidopsis thaliana RepID=Q9M898_ARATH	SoyBase	E_val: 7.00E-173	ISS

Expression Patterns of Glyma19g05460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g043700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g05460

Limit To All Plant Sequences

>Glyma19g05460.2   sequence type=transcript   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTACAGGCCACAAGTCATACAACACCTTTGTCTTTAATGAACCCCTATGTAAACGACACTTGATGGTTTTTGCGTTTAACCTAAGAAAATCGCCCAAGACGACACAAAGTATCCAAAGGAAGTTCCCACTAACCAGAGGAACGAGTGTTGAAGCAGAGTAGCAGAAGAGGGTTAATGGGAGAAGATCCACAGAAGCTGAAGCGACTAGCGGCGGATTCCTACGACTACGACAACGACTCTCGATGGCCTGGTTACTGGAACAATGTTCTCATTCCTCCCCACATGGCTTCTCGCGACGACGTCGTTTCACACTTCAAGCGCAAGTTCTACCAGCGCTACGTTGATCCTGACCTTGTGGTGGAGCCAATGTCTGTTGGTGGCAGTTCATCCCAACCGACACGTTCATCAACTACGTCATCGTCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTGGATCAACTAATAGAACTTCAGGGACATCCACAACTGCTGGTCCAGGTCCTAGTCCAACACCTTTGCGTTGGGATCGGCAGACAGTTCTATTTTCTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGCCATTCCGCTGGTACCAAAGCATCTTTCTCATAGGGCTTATCGCCTTTGTTTCCTGGGCACTCTTTGCTCTTCTTTGTACTCATTGTACTCGCAATATGGGAAGCCAAGAGCATGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAGTTGCTTCAAAGGATTTTATATACTTCATCTACTGCCTTACATTTGTTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCTTTTGAACATGTTGCCAAGTTCCTTAGACGTAATTTCAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACAATTCTACCCTCAATATACTGACATCGCATGCCGAGATTGGACTTGGATTCTTGCTGATCATCTCATTGTGGCAGCGGAACATAATACAAACATTCATGTACTGGCAGCTTTTGAAGCTCATGTATCATGTTCCTGTTACTGCCCCTTACCATCAGAGTGTTTGGGCGCAAATTGGGAGGACGGTTAATCCACTCATCCAACGCCATGCGCCATTCTTAAAGACTCCTATATCTACAATTCAAAGATGGTGGCTAAGGTAGAAGCTGGGCTAAAATGTTTCAATATGAACACCAAGTAAACAATTTTTGTTCCTTTATCATAAAATACAGATTGATTTCACATCATGTGGCCAGTTGCTCATATTACGAAGAACTGACGGTAGATTTGGGGTTGAATAATGTTATAACACAATGAATCTTAGTTTGATTGAGTAGTGTGTTTATTTTATTTCCACTTAAGCATTCATTATTCGTACTGATCCATGCTTAAACATGTAGTTGGTAATTTGATTATTTACGAGAATTTGTTATTTTATTCCCAATTTTTTTTTTCCGAGAAACATCGTGAAGGATTACCAACTGTAAAAAGTTATTTTTCTAAAATAAGTTAATCTGAAT

>Glyma19g05460.3   sequence type=transcript   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTACAGGCCACAAGTCATACAACACCTTTGTCTTTAATGAACCCCTATGTAAACGACACTTGATGGTTTTTGCGTTTAACCTAAGAAAATCGCCCAAGACGACACAAAGTATCCAAAGGAAGTTCCCACTAACCAGAGGAACGAGTGTTGAAGCAGAGTAGCAGAAGAGGGTTAATGGGAGAAGATCCACAGAAGCTGAAGCGACTAGCGGCGGATTCCTACGACTACGACAACGACTCTCGATGGCCTGGTTACTGGAACAATGTTCTCATTCCTCCCCACATGGCTTCTCGCGACGACGTCGTTTCACACTTCAAGCGCAAGTTCTACCAGCGCTACGTTGATCCTGACCTTGTGGTGGAGCCAATGTCTGTTGGTGGCAGTTCATCCCAACCGACACGTTCATCAACTACGTCATCGTCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTGGATCAACTAATAGAACTTCAGGGACATCCACAACTGCTGGTCCAGGTCCTAGTCCAACACCTTTGCGTTGGGATCGGCAGACAGTTCTATTTTCTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGCCATTCCGCTGGTACCAAAGCATCTTTCTCATAGGGCTTATCGCCTTTGTTTCCTGGGCACTCTTTGCTCTTCTTTGTACTCATTGTACTCGCAATATGGGAAGCCAAGAGCATGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAGTTGCTTCAAAGGATTTTATATACTTCATCTACTGCCTTACATTTGTTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCTTTTGAACATGTTGCCAAGTTCCTTAGACGTAATTTCAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACAATTCTACCCTCAATATACTGACATCGCATGCCGAGATTGGACTTGGATTCTTGCTGATCATCTCATTGTTCTCGTAAGTTTCTCAAGCATTTTCTCTCCCCCCCCCCCCCCCCTGCCAGTAATGTTTCTGTCATTGTTAAACGGTGGCGGAATGGCTTGGCGGATTTTCTGCCAACCGCTATAGGCAATTTGTGAAGGGAGGCCCGCTATGGTGGCACCATAGGCAACAATGGTGTGTTTATATGGCAGAATTTTGGCCTTCTGCCATTGATTACACTGGGTTTTATGCTACATATCCCTTTTCTGTAGTATTGTTGACTCATTCCACCTTTATTTTTTACCCACACATGCAGGTGGCAGCGGAACATAATACAAACATTCATGTACTGGCAGCTTTTGAAGCTCATGTATCATGTTCCTGTTACTGCCCCTTACCATCAGAGTGTTTGGGCGCAAATTGGGAGGACGGTTAATCCACTCATCCAACGCCATGCGCCATTCTTAAAGACTCCTATATCTACAATTCAAAGATGGTGGCTAAGGTAGAAGCTGGGCTAAAATGTTTCAATATGAACACCAAGTAAACAATTTTTGTTCCTTTATCATAAAATACAGATTGATTTCACATCATGTGGCCAGTTGCTCATATTACGAAGAACTGACGGTAGATTTGGGGTTGAATAATGTTATAACACAATGAATCTTAGTTTGATTGAGTAGTGTGTTTATTTTATTTCCACTTAAGCATTCATTATTCGTACTGATCCATGCTTAAACATGTAGTTGGTAATTTGATTATTTACGAGAATTTGTTATTTTATTCCCAATTTTTTTTTTCCGAGAAACATCGTGAAGGATTACCAACTGTAAAAAGTTATTTTTCTAAAATAAGTTAATCTGAAT

Coding sequences of Glyma19g05460

Limit To All Plant Sequences

>Glyma19g05460.1   sequence type=CDS   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGATCCACAGAAGCTGAAGCGACTAGCGGCGGATTCCTACGACTACGACAACGACTCTCGATGGCCTGGTTACTGGAACAATGTTCTCATTCCTCCCCACATGGCTTCTCGCGACGACGTCGTTTCACACTTCAAGCGCAAGTTCTACCAGCGCTACGTTGATCCTGACCTTGTGGTGGAGCCAATGTCTGTTGGTGGCAGTTCATCCCAACCGACACGTTCATCAACTACGTCATCGTCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTGGATCAACTAATAGAACTTCAGGGACATCCACAACTGCTGGTCCAGGTCCTAGTCCAACACCTTTGCGTTGGGATCGGCAGACAGTTCTATTTTCTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGCCATTCCGCTGGTACCAAAGCATCTTTCTCATAGGGCTTATCGCCTTTGTTTCCTGGGCACTCTTTGCTCTTCTTTGTACTCATTGTACTCGCAATATGGGAAGCCAAGAGCATGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAGTTGCTTCAAAGGATTTTATATACTTCATCTACTGCCTTACATTTGTTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCTTTTGAACATGTTGCCAAGTTCCTTAGACGTAATTTCAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACAATTCTACCCTCAATATACTGACATCGCATGCCGAGATTGGACTTGGATTCTTGCTGATCATCTCATTGTTCTCGTGGCAGCGGAACATAATACAAACATTCATGTACTGGCAGCTTTTGAAGCTCATGTATCATGTTCCTGTTACTGCCCCTTACCATCAGAGTGTTTGGGCGCAAATTGGGAGGACGGTTAATCCACTCATCCAACGCCATGCGCCATTCTTAAAGACTCCTATATCTACAATTCAAAGATGGTGGCTAAGGTAG

>Glyma19g05460.2   sequence type=CDS   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGATCCACAGAAGCTGAAGCGACTAGCGGCGGATTCCTACGACTACGACAACGACTCTCGATGGCCTGGTTACTGGAACAATGTTCTCATTCCTCCCCACATGGCTTCTCGCGACGACGTCGTTTCACACTTCAAGCGCAAGTTCTACCAGCGCTACGTTGATCCTGACCTTGTGGTGGAGCCAATGTCTGTTGGTGGCAGTTCATCCCAACCGACACGTTCATCAACTACGTCATCGTCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTGGATCAACTAATAGAACTTCAGGGACATCCACAACTGCTGGTCCAGGTCCTAGTCCAACACCTTTGCGTTGGGATCGGCAGACAGTTCTATTTTCTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGCCATTCCGCTGGTACCAAAGCATCTTTCTCATAGGGCTTATCGCCTTTGTTTCCTGGGCACTCTTTGCTCTTCTTTGTACTCATTGTACTCGCAATATGGGAAGCCAAGAGCATGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAGTTGCTTCAAAGGATTTTATATACTTCATCTACTGCCTTACATTTGTTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCTTTTGAACATGTTGCCAAGTTCCTTAGACGTAATTTCAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACAATTCTACCCTCAATATACTGACATCGCATGCCGAGATTGGACTTGGATTCTTGCTGATCATCTCATTGTGGCAGCGGAACATAATACAAACATTCATGTACTGGCAGCTTTTGAAGCTCATGTATCATGTTCCTGTTACTGCCCCTTACCATCAGAGTGTTTGGGCGCAAATTGGGAGGACGGTTAATCCACTCATCCAACGCCATGCGCCATTCTTAAAGACTCCTATATCTACAATTCAAAGATGGTGGCTAAGGTAG

>Glyma19g05460.3   sequence type=CDS   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGATCCACAGAAGCTGAAGCGACTAGCGGCGGATTCCTACGACTACGACAACGACTCTCGATGGCCTGGTTACTGGAACAATGTTCTCATTCCTCCCCACATGGCTTCTCGCGACGACGTCGTTTCACACTTCAAGCGCAAGTTCTACCAGCGCTACGTTGATCCTGACCTTGTGGTGGAGCCAATGTCTGTTGGTGGCAGTTCATCCCAACCGACACGTTCATCAACTACGTCATCGTCATCATCGCCCCCAACAAATAATCAACCTCGTGCAAGAAGTTCTGGATCAACTAATAGAACTTCAGGGACATCCACAACTGCTGGTCCAGGTCCTAGTCCAACACCTTTGCGTTGGGATCGGCAGACAGTTCTATTTTCTGTCTATGCTTGGGTGTTTGTTGTGGCTTTCCTTGCAGCCATTCCGCTGGTACCAAAGCATCTTTCTCATAGGGCTTATCGCCTTTGTTTCCTGGGCACTCTTTGCTCTTCTTTGTACTCATTGTACTCGCAATATGGGAAGCCAAGAGCATGGAATTTGCAGGCCTTGCAAGTTTACTTTCAGTCAATAGTTGCTTCAAAGGATTTTATATACTTCATCTACTGCCTTACATTTGTTACATCTCATCTTTGCCTTAAATTTGCTTTGATCCCCATCTTGTGTTGGTCTTTTGAACATGTTGCCAAGTTCCTTAGACGTAATTTCAGTCGCTCTACCTTGTACAGGAAGTACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACAATTCTACCCTCAATATACTGACATCGCATGCCGAGATTGGACTTGGATTCTTGCTGATCATCTCATTGTTCTCGTAA

Predicted protein sequences of Glyma19g05460

Limit To All Plant Sequences

>Glyma19g05460.1   sequence type=predicted peptide   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEDPQKLKRLAADSYDYDNDSRWPGYWNNVLIPPHMASRDDVVSHFKRKFYQRYVDPDLVVEPMSVGGSSSQPTRSSTTSSSSSPPTNNQPRARSSGSTNRTSGTSTTAGPGPSPTPLRWDRQTVLFSVYAWVFVVAFLAAIPLVPKHLSHRAYRLCFLGTLCSSLYSLYSQYGKPRAWNLQALQVYFQSIVASKDFIYFIYCLTFVTSHLCLKFALIPILCWSFEHVAKFLRRNFSRSTLYRKYLEEPCVWVESNNSTLNILTSHAEIGLGFLLIISLFSWQRNIIQTFMYWQLLKLMYHVPVTAPYHQSVWAQIGRTVNPLIQRHAPFLKTPISTIQRWWLR*

>Glyma19g05460.2   sequence type=predicted peptide   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEDPQKLKRLAADSYDYDNDSRWPGYWNNVLIPPHMASRDDVVSHFKRKFYQRYVDPDLVVEPMSVGGSSSQPTRSSTTSSSSSPPTNNQPRARSSGSTNRTSGTSTTAGPGPSPTPLRWDRQTVLFSVYAWVFVVAFLAAIPLVPKHLSHRAYRLCFLGTLCSSLYSLYSQYGKPRAWNLQALQVYFQSIVASKDFIYFIYCLTFVTSHLCLKFALIPILCWSFEHVAKFLRRNFSRSTLYRKYLEEPCVWVESNNSTLNILTSHAEIGLGFLLIISLWQRNIIQTFMYWQLLKLMYHVPVTAPYHQSVWAQIGRTVNPLIQRHAPFLKTPISTIQRWWLR*

>Glyma19g05460.3   sequence type=predicted peptide   gene model=Glyma19g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEDPQKLKRLAADSYDYDNDSRWPGYWNNVLIPPHMASRDDVVSHFKRKFYQRYVDPDLVVEPMSVGGSSSQPTRSSTTSSSSSPPTNNQPRARSSGSTNRTSGTSTTAGPGPSPTPLRWDRQTVLFSVYAWVFVVAFLAAIPLVPKHLSHRAYRLCFLGTLCSSLYSLYSQYGKPRAWNLQALQVYFQSIVASKDFIYFIYCLTFVTSHLCLKFALIPILCWSFEHVAKFLRRNFSRSTLYRKYLEEPCVWVESNNSTLNILTSHAEIGLGFLLIISLFS*

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