SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15860 | AT | Annotation by Michelle Graham. TAIR10: prenylcysteine methylesterase | chr5:5178676-5181263 REVERSE LENGTH=427 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0000139 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0010296 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenylcysteine methylesterase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1515 | KOG | Arylacetamide deacetylase | JGI | ISS | |
| PTHR23024 | Panther | MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES | JGI | ISS | |
| PTHR23024:SF44 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07859 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7ZZ54 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bile salt-activated lipase n=2 Tax=Medicago truncatula RepID=G7ZZ54_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189DAA6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189DAA6 related cluster n=1 Tax=unknown RepID=UPI000189DAA6 | SoyBase | E_val: 0 | ISS |
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Glyma19g05450 not represented in the dataset |
Glyma19g05450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g040900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05450.1 sequence type=CDS gene model=Glyma19g05450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCCTCTCCGATCATCGCCGCCGCATGCTCCCGCCGGAGAACGTTGACGCGCAGCCAATAACTTCGGACTCCGTCTCTAACAACCACCGCACCACTCATCGGCGCGATGCCGGAAATAACGGCCTCCGGCATCGCCTCGTTCGGCAAGAATCTTTGCGCAGAAATATCGAACACGTCGCCGCGGAAACCTACTTGGTTTCTCGTCTCGCCTTCACGCTTCTTCGCTATCTCGGGATTGGTTACCGTTGGATTACACAATTACTTGCCCTAGGATGTTATGCCATGCTACTTATGCCCGGGTTTTTACAAGTTGCATATTACTATTTCTTCACAAGCAAAGTAAAGCGAAGCATTGTTTATGGAGATCAGCCTAGAAACAGGTTGGATCTGTATCTACCTGCCAATATTGGTGAACCTAAGCCAGTTTTGATATTTGTAACTGGGGGAGCATGGATTATTGGGTATAAAGCATGGGGCTCCCTTTTAGGACTACAGTTGGCAGAAAGAGGCATTATGGTGGCATGCATTGATTACAGAAATTTTCCTCAAGGGACCATCAGCGACATGGTAAATGATACTTCGCGGGGAATTTCCTTCATCATCAACAACATAGCTAATTATGGAGGTGACCCTAATAGGATTTATCTAATGGGGCAATCTGCTGGTGCTCATATTTCTTCTTGTGCTTTACTGGAGCAAGCAGCCAGAGAATCGGAAAAAGAAGATAGTGTTTCTTGGAGCATTTCCCAGTTAAAAGCTTATCTTGGTTTATCTGGAGGATACAACTTACTGGATTTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAGCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAATTCAAGATCCATGCCTCAAATCTTCCATTCCTCACTTTCCCCCTGTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAGTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATTTTATACGAGGGGAAGACTCATACAGATTTGTTTCTCCAAGATCCGCTCCGAGGTGGTAAAGATGACCTATTTGATCTTGCAGTTGCCATTATGCATTCCAATGATAGTGATGCTCTTGCAAACGATGCCATTGCACCCCCAAGAAGACGGTTTGTTCCTGAGATTTTATTAAAGTTGGCTAGAAAGATCAGTCCTTTCTAA
>Glyma19g05450.1 sequence type=predicted peptide gene model=Glyma19g05450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSDHRRRMLPPENVDAQPITSDSVSNNHRTTHRRDAGNNGLRHRLVRQESLRRNIEHVAAETYLVSRLAFTLLRYLGIGYRWITQLLALGCYAMLLMPGFLQVAYYYFFTSKVKRSIVYGDQPRNRLDLYLPANIGEPKPVLIFVTGGAWIIGYKAWGSLLGLQLAERGIMVACIDYRNFPQGTISDMVNDTSRGISFIINNIANYGGDPNRIYLMGQSAGAHISSCALLEQAARESEKEDSVSWSISQLKAYLGLSGGYNLLDLVDHFHNRGLDRSIFLSIMEGENSLKEFSPEIKIQDPCLKSSIPHFPPVYLVHGTADYSIPSVASERFAEALKKAGVRAELILYEGKTHTDLFLQDPLRGGKDDLFDLAVAIMHSNDSDALANDAIAPPRRRFVPEILLKLARKISPF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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