SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G38600 | AT | Annotation by Michelle Graham. TAIR10: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein | chr5:15457386-15460466 FORWARD LENGTH=532 | SoyBase | E_val: 3.00E-125 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR13316 | Panther | ZINC FINGER, CCHC DOMAIN CONTAINING 8 | JGI | ISS | |
| PF04046 | PFAM | PSP | JGI | ISS | |
| UniRef100_G7ZZ57 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCHC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZZ57_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E340 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E340 related cluster n=1 Tax=unknown RepID=UPI000233E340 | SoyBase | E_val: 0 | ISS |
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Glyma19g05440 not represented in the dataset |
Glyma19g05440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g040800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05440.3 sequence type=transcript gene model=Glyma19g05440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTGAGCATAGGGCAGTGTTCTGTTTTGGTTTGGGATCCCAATTCACGGAACCTACTCTCTACCCTCCAGGGTTCCTTCTTTCACCTCTGCAATTTCTACTCCGCCACGCCCTACGACATTGTTCGTCGTAACCCTCTCTTCGTTCCACTTAGGAGAAAAGGGTTTGTTTGGATATGGAAGGTGACGAGCACATGAACGAGGTTCCATCAGAGAACAGCAACTTGGGAAGTGATTCTTTGGAAAAGGAGAACATTTTGGAAGATGAAAAGGAGGATTTGCAAGATGGGTTGAAGTTGAAGGTGGTCACTGAGGAAGTGAGTGGAGGATTGCTCGCTGAGAATGGTTGCATTTCTCTTGAGGATGGGAGTCTCAAAAGAAGCCTTGAGACTGTTGGAACATCCGTATCAGGTGCTAAAAGAGCTCGAATTACAGTTGATGAATATCAACCTTCAGTTCATTTTACGTATAATTCCCTAACAAGAGCTAGTAGACAGAAGCTTCAGGAACTTCTACAGAAATGGTCAGCATGGCATGCTAAACATGTTTCGTCATCCAGTGATGCTAGCGAAGTGTTGGAATCCGGTGAGGAGACATTTTTTCCTGCTTTGCATGTTGGACTTGAAAAGACTTCTGCCGTGTCATTCTGGATGGAGAACCAAACAAGAAATGATAAGAACAAAGATTTCATTCCTTTAGCTGATAATACTGTGCCTCTATATGATCGTGGATATGCTTTGGGATTGACTTCAGCTGATGGCTCAAGTAATGTGGATGGTGGTCTGGAGATTATTGATGCTGCTGCTAGGTGTTTCAATTGTGGTTCTTACAACCACTCTTTGAGAGAGTGTCCAAGGCCCCGTGACAACATTGCTGTCAATAATGCTCGCGATAAACTCAAGTCCCGACGGAATCAGAATTCTTCTTCCCGGCATCCAACTCGTTATTATCAGAATTCTCCAGCTGGAAAGTATGATGGTTTGAGGCCAGGATCTCTGGATGATGCAACACGTAAACTTTTGGGCTTGAGGGAGCTTGATCCACCTCCGTGGCTTAACAGAATGCGAGAACTAGGATACCCACCTGGATATCTTGATGTGGACAATGAGGATCAGCCTTCTGGCATTACAATATTCACTGATAGTGAGATTGCTGACCAAGAGGATGGGGAAATTATGGAAGCTAATGCTTCCAAACCAAAGCGTAAAAAGACTGTCAAATTTCCTGGAATAAATGCTCCTATTCCAGAAAAAGCGGATGAAAGATTGTGGGGCACTAGGGCTGGACCCTCGAGTTCAGATATATCAAGAAACTTGTCATTGCCACAGCACAGGTCGAATTATAGTACTGATTATGGCAGTCGAGGATATCATCGCGAACATAGATTAGGGGATCTTAGGGATGAAGGTCCACCAGGGGACCCAGGACATAGTTCATTTATGTTCAGTTTTCATCCTAGGTTTGGTGGCCATGATTCTGCACTAAGAAGTCCTTCAATGGCAAGGTCTCAATCTGACAGGAGTAGAAGTCCTATGCATGATGAAGAATCCTCAATGCCTTTTTCTTTCCATTCTCTTCATTATTCATCTTCAGAGAGGCATTTTTCGCCCTTGGACCGAGATTCTGGTAGACTAGGGAGCTGGACCTCTGAAAGTATGTATTATGACAGGGACCGTGTTTTTTCGTCTCGATTTATGGACAGGTTCGACGATCGTCACTACCGCAGTTGGAGGTGAGGATGGCACAAACAGGATCAATCATATTGGTAGGTTCTGAAGATGCATTCCTGTCATTCATACATTGAAATTATTTACCCTCACTTATATTAAGGACTGGGGTTATGCAGAGTTCTAGCGAAGTTAGCAGCTTTAACCATTTTTCTGGTATAGCTTTATTTGCACTCTGCTTTATGTTATTAGGGTTTATAGCCTACTCCTAACTCTGACTTTGCTTGTAGAATGAAACTTTAGCTCATGTTTAAATCTTTGCAATAGAATATGGTTATTTGTGAAAGATGAATTATCTATTATAACTTGTTTTTTTTTTTCTTCATGTCTCTAATAGTACGTGGAGTTACTTCATTATGGAACAAGTTAAAAACAAAA
>Glyma19g05440.2 sequence type=CDS gene model=Glyma19g05440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGACGAGCACATGAACGAGGTTCCATCAGAGAACAGCAACTTGGGAAGTGATTCTTTGGAAAAGGAGAACATTTTGGAAGATGAAAAGGAGGATTTGCAAGATGGGTTGAAGTTGAAGGTGGTCACTGAGGAAGTGAGTGGAGGATTGCTCGCTGAGAATGGTTGCATTTCTCTTGAGGATGGGAGTCTCAAAAGAAGCCTTGAGACTGTTGGAACATCCGTATCAGGTGCTAAAAGAGCTCGAATTACAGTTGATGAATATCAACCTTCAGTTCATTTTACGTATAATTCCCTAACAAGAGCTAGTAGACAGAAGCTTCAGGAACTTCTACAGAAATGGTCAGCATGGCATGCTAAACATGTTTCGTCATCCAGTGATGCTAGCGAAGTGTTGGAATCCGGTGAGGAGACATTTTTTCCTGCTTTGCATGTTGGACTTGAAAAGACTTCTGCCGTGTCATTCTGGATGGAGAACCAAACAAGAAATGATAAGAACAAAGATTTCATTCCTTTAGCTGATAATACTGTGCCTCTATATGATCGTGGATATGCTTTGGGATTGACTTCAGCTGATGGCTCAAGTAATGTGGATGGTGGTCTGGAGATTATTGATGCTGCTGCTAGGTGTTTCAATTGTGGTTCTTACAACCACTCTTTGAGAGAGTGTCCAAGGCCCCGTGACAACATTGCTGTCAATAATGCTCGCGATAAACTCAAGTCCCGACGGAATCAGAATTCTTCTTCCCGGCATCCAACTCGTTATTATCAGAATTCTCCAGCTGGAAAGTATGATGGTTTGAGGCCAGGATCTCTGGATGATGCAACACGTAAACTTTTGGGCTTGAGGGAGCTTGATCCACCTCCGTGGCTTAACAGAATGCGAGAACTAGGATACCCACCTGGATATCTTGATGTGGACAATGAGGATCAGCCTTCTGGCATTACAATATTCACTGATAGTGAGATTGCTGACCAAGAGGATGGGGAAATTATGGAAGCTAATGCTTCCAAACCAAAGCGTAAAAAGACTGTCAAATTTCCTGGAATAAATGCTCCTATTCCAGAAAAAGCGGATGAAAGATTGTGGGGCACTAGGGCTGGACCCTCGAGTTCAGATATATCAAGAAACTTGTCATTGCCACAGCACAGGTCGAATTATAGTACTGATTATGGCAGTCGAGGATATCATCGCGAACATAGATTAGGGGATCTTAGGGATGAAGGTCCACCAGGGGACCCAGGACATAGTTCATTTATGTTCAGTTTTCATCCTAGGTTTGGTGGCCATGATTCTGCACTAAGAAGTCCTTCAATGGCAAGGTCTCAATCTGACAGGAGTAGAAGTCCTATGCATGATGAAGAATCCTCAATGCCTTTTTCTTTCCATTCTCTTCATTATTCATCTTCAGAGAGGCATTTTTCGCCCTTGGACCGAGATTCTGGTAGACTAGGGAGCTGGACCTCTGAAAGTATGTATTATGACAGGGACCGTGTTTTTTCGTCTCGATTTATGGACAGGTTCGACGATCGTCACTACCGCAGTTGGAGGTGA >Glyma19g05440.3 sequence type=CDS gene model=Glyma19g05440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGACGAGCACATGAACGAGGTTCCATCAGAGAACAGCAACTTGGGAAGTGATTCTTTGGAAAAGGAGAACATTTTGGAAGATGAAAAGGAGGATTTGCAAGATGGGTTGAAGTTGAAGGTGGTCACTGAGGAAGTGAGTGGAGGATTGCTCGCTGAGAATGGTTGCATTTCTCTTGAGGATGGGAGTCTCAAAAGAAGCCTTGAGACTGTTGGAACATCCGTATCAGGTGCTAAAAGAGCTCGAATTACAGTTGATGAATATCAACCTTCAGTTCATTTTACGTATAATTCCCTAACAAGAGCTAGTAGACAGAAGCTTCAGGAACTTCTACAGAAATGGTCAGCATGGCATGCTAAACATGTTTCGTCATCCAGTGATGCTAGCGAAGTGTTGGAATCCGGTGAGGAGACATTTTTTCCTGCTTTGCATGTTGGACTTGAAAAGACTTCTGCCGTGTCATTCTGGATGGAGAACCAAACAAGAAATGATAAGAACAAAGATTTCATTCCTTTAGCTGATAATACTGTGCCTCTATATGATCGTGGATATGCTTTGGGATTGACTTCAGCTGATGGCTCAAGTAATGTGGATGGTGGTCTGGAGATTATTGATGCTGCTGCTAGGTGTTTCAATTGTGGTTCTTACAACCACTCTTTGAGAGAGTGTCCAAGGCCCCGTGACAACATTGCTGTCAATAATGCTCGCGATAAACTCAAGTCCCGACGGAATCAGAATTCTTCTTCCCGGCATCCAACTCGTTATTATCAGAATTCTCCAGCTGGAAAGTATGATGGTTTGAGGCCAGGATCTCTGGATGATGCAACACGTAAACTTTTGGGCTTGAGGGAGCTTGATCCACCTCCGTGGCTTAACAGAATGCGAGAACTAGGATACCCACCTGGATATCTTGATGTGGACAATGAGGATCAGCCTTCTGGCATTACAATATTCACTGATAGTGAGATTGCTGACCAAGAGGATGGGGAAATTATGGAAGCTAATGCTTCCAAACCAAAGCGTAAAAAGACTGTCAAATTTCCTGGAATAAATGCTCCTATTCCAGAAAAAGCGGATGAAAGATTGTGGGGCACTAGGGCTGGACCCTCGAGTTCAGATATATCAAGAAACTTGTCATTGCCACAGCACAGGTCGAATTATAGTACTGATTATGGCAGTCGAGGATATCATCGCGAACATAGATTAGGGGATCTTAGGGATGAAGGTCCACCAGGGGACCCAGGACATAGTTCATTTATGTTCAGTTTTCATCCTAGGTTTGGTGGCCATGATTCTGCACTAAGAAGTCCTTCAATGGCAAGGTCTCAATCTGACAGGAGTAGAAGTCCTATGCATGATGAAGAATCCTCAATGCCTTTTTCTTTCCATTCTCTTCATTATTCATCTTCAGAGAGGCATTTTTCGCCCTTGGACCGAGATTCTGGTAGACTAGGGAGCTGGACCTCTGAAAGTATGTATTATGACAGGGACCGTGTTTTTTCGTCTCGATTTATGGACAGGTTCGACGATCGTCACTACCGCAGTTGGAGGTGA
>Glyma19g05440.2 sequence type=predicted peptide gene model=Glyma19g05440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDEHMNEVPSENSNLGSDSLEKENILEDEKEDLQDGLKLKVVTEEVSGGLLAENGCISLEDGSLKRSLETVGTSVSGAKRARITVDEYQPSVHFTYNSLTRASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDKLKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIADQEDGEIMEANASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDSALRSPSMARSQSDRSRSPMHDEESSMPFSFHSLHYSSSERHFSPLDRDSGRLGSWTSESMYYDRDRVFSSRFMDRFDDRHYRSWR* >Glyma19g05440.3 sequence type=predicted peptide gene model=Glyma19g05440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDEHMNEVPSENSNLGSDSLEKENILEDEKEDLQDGLKLKVVTEEVSGGLLAENGCISLEDGSLKRSLETVGTSVSGAKRARITVDEYQPSVHFTYNSLTRASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDKLKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIADQEDGEIMEANASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDSALRSPSMARSQSDRSRSPMHDEESSMPFSFHSLHYSSSERHFSPLDRDSGRLGSWTSESMYYDRDRVFSSRFMDRFDDRHYRSWR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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