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Report for Sequence Feature Glyma19g05430

Feature Type:gene_model
Chromosome:Gm19
Start:5868381
stop:5869107
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27920AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr5:9942063-9944507 REVERSE LENGTH=642 SoyBaseE_val: 1.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF147Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7KXH5UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7KXH5_MEDTR SoyBaseE_val: 2.00E-66ISS
UniRef100_UPI000233E340UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E340 related cluster n=1 Tax=unknown RepID=UPI000233E340 SoyBaseE_val: 1.00E-86ISS

Expression Patterns of Glyma19g05430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g05430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05430
>Glyma19g05430.1   sequence type=CDS   gene model=Glyma19g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACTGAGAATTGTCTTTATCAACTTGGATTAAATTGCTCACTTCTCGAAGAGGTTGATCTTACTGATTGCTTTGGTATTGATGACATAGCTCTAAGATATCTATCAAGATGTTCAGAACTTGTAAGATTGAAATTAGGATTATGCACAAACATATCAGACATAGGATTGGCACACATTGCTTATAACTGCCCAAAAATGACTGAACTTGATCTCTATCGATGTGTACGTATTGGAGATGATGGGCTAGCGGCGCTAACGAGTGGATGCAAGGGGTTGACAAACCTCAACTTGTCATATTGCAATAGAATTACATATAGAGGGTTGAAGTATATCTGCCATCTTGGTGAACTATCTGATCTGGAGTTGTGTGGGCTTTCAAATATCACAAGTGTTGGTATAAAAGCAGTTGCAATAAGTTTCTGGGCCCATGCTTTTTATTCAGAAAACCTATCGCAG
Predicted protein sequences of Glyma19g05430
>Glyma19g05430.1   sequence type=predicted peptide   gene model=Glyma19g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTENCLYQLGLNCSLLEEVDLTDCFGIDDIALRYLSRCSELVRLKLGLCTNISDIGLAHIAYNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNLNLSYCNRITYRGLKYICHLGELSDLELCGLSNITSVGIKAVAISFWAHAFYSENLSQ






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