SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16710 | AT | Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the CBP family 12 | chr1:5714692-5721782 FORWARD LENGTH=1677 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006473 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein acetylation | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity | SoyBase | N/A | ISS |
| GO:0004402 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1778 | KOG | CREB binding protein/P300 and related TAZ Zn-finger proteins | JGI | ISS | |
| PTHR13808 | Panther | CBP/P300-RELATED | JGI | ISS | |
| PF02135 | PFAM | TAZ zinc finger | JGI | ISS | |
| PF08214 | PFAM | Histone acetylation protein | JGI | ISS | |
| UniRef100_G7JBQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase n=1 Tax=Medicago truncatula RepID=G7JBQ0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N6K0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N6K0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05420 not represented in the dataset |
Glyma19g05420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05420.2 sequence type=CDS gene model=Glyma19g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACATAGAAGACAAAATCGAGTTGAACCATGATGGGATAAATGCTATAAAAGAAATCATTGAGCCAAAAGCTAATCAAGAGATGGAAATGGTGTCTCTAAATCCCATAGTTATTGTACATATGGAGGGCATACAAGCCAGAACTGGGTTCAACCAGGACGGGATAAATGCCACAAAAGAAGTTATTGAGCCAAAATTTGATGAAGAGAAGGAAAAGAAGTCCCAAAATCCAATAGTTAATATTGTAGATAAAGAAGACATACAAGACAGAATCGAGTTCATCCAGCATGGAATAAATGTTGATCCAAAGATAGAAAGGATGTCCCCAAATACAACAGTTAATACTGTTTCCTTAATTGATTTTTTCACAAGTAATCAAATAAAGGAACATATTACAAGTCTGAGAAAGCAATTTAATCAGTGGGTTGAATGCAATAAATGCAAATGTTGGCAGCATCAAATATGTGCACTCTACAACGATAAAAGAGATTTGGACTACAGAGCTGAGTATACATGTCCTATATGCCGCTTAAAGGAAATTGGAAATGGAATGCATGTACCCTTACCGAAGACAGCGGCTATGTTTAGTGCTAATGACTTGCCGAGAACCATGCTTAGCGACCACATAGAGAGCAGACTTTTTAAGCGTCTCTGGCAAGAGAATGAAGATTGGGCAAAAGCAGGGTATAAGAATCTTGATGAGTTTCTGGACATCTTTGAGGAGGAGAATTACCCTTCTGAATTTCCTTATACATTAAAAAAGATTGAAGGAGTGGATGTATGCCTTTTCGCAATGTATGTTCAGGAGTTTGGCTCAGAATGTGGCTATCCTAATCAGCGTTCTGTGTACATTTCATATCTCGATTCTGTCAAGTATTTTAGGCCTAAAAGAGTGACTAAAAGTGGAGAAGCTCTTCGTACCATCGTTTACCATGAGATATTGATTGGATATCTTGATTTTTGCAAGAAACGAGGTTTCGCAACTTGCTATATATGGGCCTGTCCACCTATGAAGGGAGAAGATTATTTACTATATTGTCATCCTGACACCCAAAAAACTCCCAAGAAAGATAAACTACGGCACTGGTATCATTCGATGCTAAGAAAGGCTGCCGAAGAAAATATCGTTGTTGGTTCAACTAACTTACATGATCATTTCTTTGTTACTACTGGAAGTTGTGACTCCAAGGTAACAACTGCTCGTTTGCCTTACTTTGATGGGGGCTTCTGGTCTGGTGCTGCTATGGATAAAGCCAGGGACATTGAACAAGAGTGTGGAGGAGATTATAAAATGATCTTCGATAAAGTAGTATCCAAAAGATGTTTAAAGTCCATGGGACATGTAAATCCTCCTTCTGAAGGAACTGCCAAAGACATTCTAGTGATGCATAAACTGGGACAAACCATATTACCTTTCAAGGAAGATTTTCTCGTAGTTCAATTTCAGTATGTTTGCATGCACTGCCATGAAGTGATAGCAAATGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTGTTCACTCACACATTTCAGCCAAAGGCGAGAGGCATAGACTTCATCAGGTCCTCATGGATGACGTCCTTGGTGATACCAAGGAGAATGATATCATTCTTGATAATGGGTTATTTGATTCCAGACACAACTTTCTGAGCTTTTGCCAAAGGAACAGGTTTCAGTTTGACTCACTGCGCAGAGCCAAGTATTCCTCAATGATGATCCTCTACCTTGTGAAGAATCCTACTCTTCTGACTGTTGGAACAACATGCCGCGTTTGCTCTAAAAACAATGTGTCCCAGCGCTACTGGAAATGTGAGAATTGCCCTGAATTCACTGTCTGTTCTGAATGCTACAACGAGAGAGGTGCTAATTGCCATGCACACACGTTGAATGAAGCTTATTCACCAGCACAATCTCCTTCAGGGAATCAAGAATTGCAGCAGAACTCAGCAATGTTGCAGCAACTTCTGGATGTTATTGAACATGCATCTCTGTGTCACTCAATCAAAACTCAACCATGCACTTACCCACATTGCCGTCAAATTAAAAAGCTGTTCGCTCATGCCAGTAGGTGCGAAATTCGATTTTCTGGGGGGTGCCAATTTTGTAAGAAGGTTTGGCAAGGACTGACTTTACACTCAAAGAATTGCAGAGACTCAGCATGTCGCATACCCCGTTGCATGGATCTGAAGAAACAAGTAGAATGGATAGCAACGCAATCTGAATCGCGGCTTAGGGCTGCAGTTTTGCAATCGAAAGATAGCAGATAA
>Glyma19g05420.2 sequence type=predicted peptide gene model=Glyma19g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDIEDKIELNHDGINAIKEIIEPKANQEMEMVSLNPIVIVHMEGIQARTGFNQDGINATKEVIEPKFDEEKEKKSQNPIVNIVDKEDIQDRIEFIQHGINVDPKIERMSPNTTVNTVSLIDFFTSNQIKEHITSLRKQFNQWVECNKCKCWQHQICALYNDKRDLDYRAEYTCPICRLKEIGNGMHVPLPKTAAMFSANDLPRTMLSDHIESRLFKRLWQENEDWAKAGYKNLDEFLDIFEEENYPSEFPYTLKKIEGVDVCLFAMYVQEFGSECGYPNQRSVYISYLDSVKYFRPKRVTKSGEALRTIVYHEILIGYLDFCKKRGFATCYIWACPPMKGEDYLLYCHPDTQKTPKKDKLRHWYHSMLRKAAEENIVVGSTNLHDHFFVTTGSCDSKVTTARLPYFDGGFWSGAAMDKARDIEQECGGDYKMIFDKVVSKRCLKSMGHVNPPSEGTAKDILVMHKLGQTILPFKEDFLVVQFQYVCMHCHEVIANGKRWFCTECKKFQECERCHTVHSHISAKGERHRLHQVLMDDVLGDTKENDIILDNGLFDSRHNFLSFCQRNRFQFDSLRRAKYSSMMILYLVKNPTLLTVGTTCRVCSKNNVSQRYWKCENCPEFTVCSECYNERGANCHAHTLNEAYSPAQSPSGNQELQQNSAMLQQLLDVIEHASLCHSIKTQPCTYPHCRQIKKLFAHASRCEIRFSGGCQFCKKVWQGLTLHSKNCRDSACRIPRCMDLKKQVEWIATQSESRLRAAVLQSKDSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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