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Report for Sequence Feature Glyma19g05420

Feature Type:gene_model
Chromosome:Gm19
Start:5843555
stop:5856167
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16710AT Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the CBP family 12 | chr1:5714692-5721782 FORWARD LENGTH=1677 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006473GO-bp Annotation by Michelle Graham. GO Biological Process: protein acetylation SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003712GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity SoyBaseN/AISS
GO:0004402GO-mf Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1778 KOG CREB binding protein/P300 and related TAZ Zn-finger proteins JGI ISS
PTHR13808Panther CBP/P300-RELATED JGI ISS
PF02135PFAM TAZ zinc finger JGI ISS
PF08214PFAM Histone acetylation protein JGI ISS
UniRef100_G7JBQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase n=1 Tax=Medicago truncatula RepID=G7JBQ0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N6K0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N6K0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g05420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g05420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05420
>Glyma19g05420.2   sequence type=CDS   gene model=Glyma19g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACATAGAAGACAAAATCGAGTTGAACCATGATGGGATAAATGCTATAAAAGAAATCATTGAGCCAAAAGCTAATCAAGAGATGGAAATGGTGTCTCTAAATCCCATAGTTATTGTACATATGGAGGGCATACAAGCCAGAACTGGGTTCAACCAGGACGGGATAAATGCCACAAAAGAAGTTATTGAGCCAAAATTTGATGAAGAGAAGGAAAAGAAGTCCCAAAATCCAATAGTTAATATTGTAGATAAAGAAGACATACAAGACAGAATCGAGTTCATCCAGCATGGAATAAATGTTGATCCAAAGATAGAAAGGATGTCCCCAAATACAACAGTTAATACTGTTTCCTTAATTGATTTTTTCACAAGTAATCAAATAAAGGAACATATTACAAGTCTGAGAAAGCAATTTAATCAGTGGGTTGAATGCAATAAATGCAAATGTTGGCAGCATCAAATATGTGCACTCTACAACGATAAAAGAGATTTGGACTACAGAGCTGAGTATACATGTCCTATATGCCGCTTAAAGGAAATTGGAAATGGAATGCATGTACCCTTACCGAAGACAGCGGCTATGTTTAGTGCTAATGACTTGCCGAGAACCATGCTTAGCGACCACATAGAGAGCAGACTTTTTAAGCGTCTCTGGCAAGAGAATGAAGATTGGGCAAAAGCAGGGTATAAGAATCTTGATGAGTTTCTGGACATCTTTGAGGAGGAGAATTACCCTTCTGAATTTCCTTATACATTAAAAAAGATTGAAGGAGTGGATGTATGCCTTTTCGCAATGTATGTTCAGGAGTTTGGCTCAGAATGTGGCTATCCTAATCAGCGTTCTGTGTACATTTCATATCTCGATTCTGTCAAGTATTTTAGGCCTAAAAGAGTGACTAAAAGTGGAGAAGCTCTTCGTACCATCGTTTACCATGAGATATTGATTGGATATCTTGATTTTTGCAAGAAACGAGGTTTCGCAACTTGCTATATATGGGCCTGTCCACCTATGAAGGGAGAAGATTATTTACTATATTGTCATCCTGACACCCAAAAAACTCCCAAGAAAGATAAACTACGGCACTGGTATCATTCGATGCTAAGAAAGGCTGCCGAAGAAAATATCGTTGTTGGTTCAACTAACTTACATGATCATTTCTTTGTTACTACTGGAAGTTGTGACTCCAAGGTAACAACTGCTCGTTTGCCTTACTTTGATGGGGGCTTCTGGTCTGGTGCTGCTATGGATAAAGCCAGGGACATTGAACAAGAGTGTGGAGGAGATTATAAAATGATCTTCGATAAAGTAGTATCCAAAAGATGTTTAAAGTCCATGGGACATGTAAATCCTCCTTCTGAAGGAACTGCCAAAGACATTCTAGTGATGCATAAACTGGGACAAACCATATTACCTTTCAAGGAAGATTTTCTCGTAGTTCAATTTCAGTATGTTTGCATGCACTGCCATGAAGTGATAGCAAATGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTGTTCACTCACACATTTCAGCCAAAGGCGAGAGGCATAGACTTCATCAGGTCCTCATGGATGACGTCCTTGGTGATACCAAGGAGAATGATATCATTCTTGATAATGGGTTATTTGATTCCAGACACAACTTTCTGAGCTTTTGCCAAAGGAACAGGTTTCAGTTTGACTCACTGCGCAGAGCCAAGTATTCCTCAATGATGATCCTCTACCTTGTGAAGAATCCTACTCTTCTGACTGTTGGAACAACATGCCGCGTTTGCTCTAAAAACAATGTGTCCCAGCGCTACTGGAAATGTGAGAATTGCCCTGAATTCACTGTCTGTTCTGAATGCTACAACGAGAGAGGTGCTAATTGCCATGCACACACGTTGAATGAAGCTTATTCACCAGCACAATCTCCTTCAGGGAATCAAGAATTGCAGCAGAACTCAGCAATGTTGCAGCAACTTCTGGATGTTATTGAACATGCATCTCTGTGTCACTCAATCAAAACTCAACCATGCACTTACCCACATTGCCGTCAAATTAAAAAGCTGTTCGCTCATGCCAGTAGGTGCGAAATTCGATTTTCTGGGGGGTGCCAATTTTGTAAGAAGGTTTGGCAAGGACTGACTTTACACTCAAAGAATTGCAGAGACTCAGCATGTCGCATACCCCGTTGCATGGATCTGAAGAAACAAGTAGAATGGATAGCAACGCAATCTGAATCGCGGCTTAGGGCTGCAGTTTTGCAATCGAAAGATAGCAGATAA
Predicted protein sequences of Glyma19g05420
>Glyma19g05420.2   sequence type=predicted peptide   gene model=Glyma19g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDIEDKIELNHDGINAIKEIIEPKANQEMEMVSLNPIVIVHMEGIQARTGFNQDGINATKEVIEPKFDEEKEKKSQNPIVNIVDKEDIQDRIEFIQHGINVDPKIERMSPNTTVNTVSLIDFFTSNQIKEHITSLRKQFNQWVECNKCKCWQHQICALYNDKRDLDYRAEYTCPICRLKEIGNGMHVPLPKTAAMFSANDLPRTMLSDHIESRLFKRLWQENEDWAKAGYKNLDEFLDIFEEENYPSEFPYTLKKIEGVDVCLFAMYVQEFGSECGYPNQRSVYISYLDSVKYFRPKRVTKSGEALRTIVYHEILIGYLDFCKKRGFATCYIWACPPMKGEDYLLYCHPDTQKTPKKDKLRHWYHSMLRKAAEENIVVGSTNLHDHFFVTTGSCDSKVTTARLPYFDGGFWSGAAMDKARDIEQECGGDYKMIFDKVVSKRCLKSMGHVNPPSEGTAKDILVMHKLGQTILPFKEDFLVVQFQYVCMHCHEVIANGKRWFCTECKKFQECERCHTVHSHISAKGERHRLHQVLMDDVLGDTKENDIILDNGLFDSRHNFLSFCQRNRFQFDSLRRAKYSSMMILYLVKNPTLLTVGTTCRVCSKNNVSQRYWKCENCPEFTVCSECYNERGANCHAHTLNEAYSPAQSPSGNQELQQNSAMLQQLLDVIEHASLCHSIKTQPCTYPHCRQIKKLFAHASRCEIRFSGGCQFCKKVWQGLTLHSKNCRDSACRIPRCMDLKKQVEWIATQSESRLRAAVLQSKDSR*






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