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Report for Sequence Feature Glyma19g05410

Feature Type:gene_model
Chromosome:Gm19
Start:5838864
stop:5841716
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24400AT Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 8 | chr4:12617379-12620443 FORWARD LENGTH=416 SoyBaseE_val: 1.00E-142ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0580 KOG Serine/threonine protein kinase JGI ISS
PTHR24343Panther SERINE/THREONINE KINASE JGI ISS
PTHR24343:SF70Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9SMX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SMX5_RICCO SoyBaseE_val: 1.00E-149ISS
UniRef100_C6T936UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T936_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g05410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g040400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g05410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05410
>Glyma19g05410.3   sequence type=CDS   gene model=Glyma19g05410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAACCTTTGCGGAAGTGAAATTCGCTCAGAACACAGGAACTGGCGAGATCGTGGCCATGAAGGTGCTCGATAGAAGCACCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCGATCATGAAGCTAGTTAGGCACCCTGATGTTGTTCGCCTGCACGAGGTTCTTGCAAGCCGTACTAAGCTTTATATTATATTGGAGTTCATCACGGGTGGTGAGTTGTTTGATAAAATTATACACCATGGACGCCTTAGTGAAGCTGACTCTAGAAGATATTTCCAACAGCTTATTGACGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACTAGGAAATATAAAGATTTTCGATTTTGGTTTGAGTGCATTTCCTGAGCAGGGGGTGAGTATCCTTCGGACAACTTGTGGGACTCCGAACTATGTGGCTCCTAAGGTACTCAGTCATAAGAGTTACAATGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTTTCTCCTACTGGCTGGATATCTTCCTTTTGATGAGCTTGATCTAACCACCTTATATAGTAAGATTGAGAGAACAGAGTTTTCATGCCCTCTTTGGTATCCAGTGGGAGCAAAAATGTTGATATATAGAATTTTGGACCCAAATCCTGAAACTATTGAGACATTCACAAAAGTTGGACAATTGGAAAAGGCCAGTGATGCTGAAGAGTATTCAAGTTGA
Predicted protein sequences of Glyma19g05410
>Glyma19g05410.3   sequence type=predicted peptide   gene model=Glyma19g05410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTFAEVKFAQNTGTGEIVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPDVVRLHEVLASRTKLYIILEFITGGELFDKIIHHGRLSEADSRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKIFDFGLSAFPEQGVSILRTTCGTPNYVAPKVLSHKSYNGAVADVWSCGVILFLLLAGYLPFDELDLTTLYSKIERTEFSCPLWYPVGAKMLIYRILDPNPETIETFTKVGQLEKASDAEEYSS*






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