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Report for Sequence Feature Glyma19g05385

Feature Type:gene_model
Chromosome:Gm19
Start:5831345
stop:5831840
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04030AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr3:1042920-1044574 REVERSE LENGTH=388 SoyBaseE_val: 7.00E-38ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_G7ITS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR18 n=1 Tax=Medicago truncatula RepID=G7ITS9_MEDTR SoyBaseE_val: 6.00E-39ISS
UniRef100_UPI000233E33EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E33E related cluster n=1 Tax=unknown RepID=UPI000233E33E SoyBaseE_val: 2.00E-55ISS

Expression Patterns of Glyma19g05385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05385 not represented in the dataset
Glyma19g05385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g040300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g05385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05385
>Glyma19g05385.1   sequence type=CDS   gene model=Glyma19g05385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCATGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATGAACTTGGCGGAGTAGACAAAGCTACACCAAAAATAGTATTGAAACTAATGGGGATTCCTAGACTTACTCTTTACCACTTAAAGAGTCATCTACAGGTAACATTATTTCAACTACCAATATAA
Predicted protein sequences of Glyma19g05385
>Glyma19g05385.1   sequence type=predicted peptide   gene model=Glyma19g05385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHALRMHSPTERHMMMHGGNGSGDSGLVLSTDAKPRLKWTPDLHERFIEAVNELGGVDKATPKIVLKLMGIPRLTLYHLKSHLQVTLFQLPI*






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