SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02450 | AT | Annotation by Michelle Graham. TAIR10: cell division protein ftsH, putative | chr3:502876-505030 REVERSE LENGTH=622 | SoyBase | E_val: 0 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0728 | KOG | 26S proteasome regulatory complex, ATPase RPT6 | JGI | ISS | |
| PTHR23076 | Panther | METALLOPROTEASE M41 FTSH | JGI | ISS | |
| PTHR23076:SF35 | Panther | JGI | ISS | ||
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF06480 | PFAM | FtsH Extracellular | JGI | ISS | |
| UniRef100_B9SIY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division protease ftsH, putative n=1 Tax=Ricinus communis RepID=B9SIY9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E33D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E33D related cluster n=1 Tax=unknown RepID=UPI000233E33D | SoyBase | E_val: 0 | ISS |
|
Glyma19g05370 not represented in the dataset |
Glyma19g05370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g040200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05370.1 sequence type=CDS gene model=Glyma19g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGTTTTTCATTACCTTGCAATACTGGGTCATTTGTTACCCCAACTTTGGCTCAAAGAAGATATTTTGGGGTATGTGGAGGTTTGTGCACTAGTTCATTTGCTTTTACTTCTCTAGGGTTTAACCAATGCTTCAAATTTCAACATGAGTTGGTTTGGAGAAGTAGAATTCCCTCATTGAGGGTTCCTCATTGTTGCAAGACTCCACATGGTGTTTCAAGTAACAACAAAATTGAGCCACTTGTAAGTAGAAGCAAGGGTGAGAAAAAGACTCACTATGGTAAGGATGGAACTGATAGGTTGAAGAAGAGATTTTCGTTGAGATTGAGGCCGAGGTTACGGTTATTGGCTATGAGAATGAAAAGGGCTTCCATTAAGTCCATTTTGAATGAATTGGGGATCCTTATTCGTAAGAACATTAGAGCAGTGGCGTTTTCTGCTTCAATTTCTACTGTGTTCTGCCTTTGTTTCTTGTTTCTGAAATTGACTGCACTCCCCCCTCCGAAATCTGTTCCGTATTCTGACTTGATCATCAGCCTTCAGAATGGACATGTTGAAAAGGTTTTAGTTGAAGAGGGGTCTCGACGCATATATTACAATATGAAGTCCCAGAATATTGAAAATGATCCGGTTTCTGGGGAAGAATCTGAAGTGGCAGATGCTTCAATTGATAAGGATGTTGATAAGATTGGGAGTGAGGGTACTTCTAAAGCTGGCCAAACTCCAGTGGGGAATGTACTAAAAAAATTCTCTAAGACTCGAGCTTCAATCCCTGAGTGGCAGTATTCCACAAGAAAAATAGATCATGATGGAAAGTTCCTTGTTGGTTTGATGAGAGAAAAAGGGGTTACGTATAGCTCTGCTCCTCAGTCTGTATTAATGTCAATGAGGAGTACTTTGATCACTGTGATAACACTGTGGATACCTTTAATTCCATTGATGTGGCTTCTGTATCGCCAACTTTCGGCTGCTAATAGTCCCGCAAGGAAGCAGAGACCAAATGGTCAGACAGTTGGATTTGATGATGTGGAAGGTGTTGATTCTGCAAAAGTAGAGCTCGTGGAGATAGTATCATGTCTGCAAGGGGATATAAATTACCGAAAGCTAGGGGCAAAGTTACCTAGAGGTGTGTTGCTGGTGGGTCCTCCTGGAACTGGGAAGACACTACTTGCGCGTGCAGTGGCAGGGGAAGCAGGTGTACCCTTTTTCACTGTATCTGCCAGTGAGTTTGTGGAGTTGTTTGTTGGAAGAGGGGCAGCTAGAATCAGAGACCTTTTCAATGCAGCAAGAAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCAGTTGGAGGCAAGCGTGGAAGAAGTTTCAATGATGAACGTGACCAGACGTTAAATCAGTTGCTGACAGAAATGGATGGATTTGAATCCGAGATGAGAGTGGTTGTCATTGCAGCAACTAATCGGCCCGAAGCCTTGGATCCAGCCCTATGTCGCCCTGGTCGTTTCTCGAGAAAAGTATATGTAGGTGAACCTGATGAAGAAGGAAGGAGAAAGATATTGGCTGTGCATCTAAGAGGAGTTCCTTTGGAGGAGGACAGTAGCATCATTTGCCATTTAATTGCTTCTCTTACTACTGGTTTAGTAGGTGCTGATCTGGCAAATGTTGTCAATGAAGCCGCGTTGCTTGCTGCTCGTAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATGGAAAGAGCAAAATTCGGAATCAGTGATAAACAATTGAGGTCAAGTAAAATAAGCAAGGAGCTAAGCAAGCTATTCCCATGGATGCCATCATTGATGGGAAAAAGTGAGAGGAGACAGGATGACCTGCAAGGACCATTAGGTTATCAATCACTGAGTTCATGA
>Glyma19g05370.1 sequence type=predicted peptide gene model=Glyma19g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACFSLPCNTGSFVTPTLAQRRYFGVCGGLCTSSFAFTSLGFNQCFKFQHELVWRSRIPSLRVPHCCKTPHGVSSNNKIEPLVSRSKGEKKTHYGKDGTDRLKKRFSLRLRPRLRLLAMRMKRASIKSILNELGILIRKNIRAVAFSASISTVFCLCFLFLKLTALPPPKSVPYSDLIISLQNGHVEKVLVEEGSRRIYYNMKSQNIENDPVSGEESEVADASIDKDVDKIGSEGTSKAGQTPVGNVLKKFSKTRASIPEWQYSTRKIDHDGKFLVGLMREKGVTYSSAPQSVLMSMRSTLITVITLWIPLIPLMWLLYRQLSAANSPARKQRPNGQTVGFDDVEGVDSAKVELVEIVSCLQGDINYRKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFTVSASEFVELFVGRGAARIRDLFNAARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVYVGEPDEEGRRKILAVHLRGVPLEEDSSIICHLIASLTTGLVGADLANVVNEAALLAARRGSETVAREDIMEAMERAKFGISDKQLRSSKISKELSKLFPWMPSLMGKSERRQDDLQGPLGYQSLSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
