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Report for Sequence Feature Glyma19g05370

Feature Type:gene_model
Chromosome:Gm19
Start:5803452
stop:5809172
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02450AT Annotation by Michelle Graham. TAIR10: cell division protein ftsH, putative | chr3:502876-505030 REVERSE LENGTH=622 SoyBaseE_val: 0ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004222GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0728 KOG 26S proteasome regulatory complex, ATPase RPT6 JGI ISS
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI ISS
PTHR23076:SF35Panther JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
PF06480PFAM FtsH Extracellular JGI ISS
UniRef100_B9SIY9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division protease ftsH, putative n=1 Tax=Ricinus communis RepID=B9SIY9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E33DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E33D related cluster n=1 Tax=unknown RepID=UPI000233E33D SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05370 not represented in the dataset

Glyma19g05370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g040200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g05370.1   sequence type=CDS   gene model=Glyma19g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTTTTTCATTACCTTGCAATACTGGGTCATTTGTTACCCCAACTTTGGCTCAAAGAAGATATTTTGGGGTATGTGGAGGTTTGTGCACTAGTTCATTTGCTTTTACTTCTCTAGGGTTTAACCAATGCTTCAAATTTCAACATGAGTTGGTTTGGAGAAGTAGAATTCCCTCATTGAGGGTTCCTCATTGTTGCAAGACTCCACATGGTGTTTCAAGTAACAACAAAATTGAGCCACTTGTAAGTAGAAGCAAGGGTGAGAAAAAGACTCACTATGGTAAGGATGGAACTGATAGGTTGAAGAAGAGATTTTCGTTGAGATTGAGGCCGAGGTTACGGTTATTGGCTATGAGAATGAAAAGGGCTTCCATTAAGTCCATTTTGAATGAATTGGGGATCCTTATTCGTAAGAACATTAGAGCAGTGGCGTTTTCTGCTTCAATTTCTACTGTGTTCTGCCTTTGTTTCTTGTTTCTGAAATTGACTGCACTCCCCCCTCCGAAATCTGTTCCGTATTCTGACTTGATCATCAGCCTTCAGAATGGACATGTTGAAAAGGTTTTAGTTGAAGAGGGGTCTCGACGCATATATTACAATATGAAGTCCCAGAATATTGAAAATGATCCGGTTTCTGGGGAAGAATCTGAAGTGGCAGATGCTTCAATTGATAAGGATGTTGATAAGATTGGGAGTGAGGGTACTTCTAAAGCTGGCCAAACTCCAGTGGGGAATGTACTAAAAAAATTCTCTAAGACTCGAGCTTCAATCCCTGAGTGGCAGTATTCCACAAGAAAAATAGATCATGATGGAAAGTTCCTTGTTGGTTTGATGAGAGAAAAAGGGGTTACGTATAGCTCTGCTCCTCAGTCTGTATTAATGTCAATGAGGAGTACTTTGATCACTGTGATAACACTGTGGATACCTTTAATTCCATTGATGTGGCTTCTGTATCGCCAACTTTCGGCTGCTAATAGTCCCGCAAGGAAGCAGAGACCAAATGGTCAGACAGTTGGATTTGATGATGTGGAAGGTGTTGATTCTGCAAAAGTAGAGCTCGTGGAGATAGTATCATGTCTGCAAGGGGATATAAATTACCGAAAGCTAGGGGCAAAGTTACCTAGAGGTGTGTTGCTGGTGGGTCCTCCTGGAACTGGGAAGACACTACTTGCGCGTGCAGTGGCAGGGGAAGCAGGTGTACCCTTTTTCACTGTATCTGCCAGTGAGTTTGTGGAGTTGTTTGTTGGAAGAGGGGCAGCTAGAATCAGAGACCTTTTCAATGCAGCAAGAAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCAGTTGGAGGCAAGCGTGGAAGAAGTTTCAATGATGAACGTGACCAGACGTTAAATCAGTTGCTGACAGAAATGGATGGATTTGAATCCGAGATGAGAGTGGTTGTCATTGCAGCAACTAATCGGCCCGAAGCCTTGGATCCAGCCCTATGTCGCCCTGGTCGTTTCTCGAGAAAAGTATATGTAGGTGAACCTGATGAAGAAGGAAGGAGAAAGATATTGGCTGTGCATCTAAGAGGAGTTCCTTTGGAGGAGGACAGTAGCATCATTTGCCATTTAATTGCTTCTCTTACTACTGGTTTAGTAGGTGCTGATCTGGCAAATGTTGTCAATGAAGCCGCGTTGCTTGCTGCTCGTAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATGGAAAGAGCAAAATTCGGAATCAGTGATAAACAATTGAGGTCAAGTAAAATAAGCAAGGAGCTAAGCAAGCTATTCCCATGGATGCCATCATTGATGGGAAAAAGTGAGAGGAGACAGGATGACCTGCAAGGACCATTAGGTTATCAATCACTGAGTTCATGA

>Glyma19g05370.1   sequence type=predicted peptide   gene model=Glyma19g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACFSLPCNTGSFVTPTLAQRRYFGVCGGLCTSSFAFTSLGFNQCFKFQHELVWRSRIPSLRVPHCCKTPHGVSSNNKIEPLVSRSKGEKKTHYGKDGTDRLKKRFSLRLRPRLRLLAMRMKRASIKSILNELGILIRKNIRAVAFSASISTVFCLCFLFLKLTALPPPKSVPYSDLIISLQNGHVEKVLVEEGSRRIYYNMKSQNIENDPVSGEESEVADASIDKDVDKIGSEGTSKAGQTPVGNVLKKFSKTRASIPEWQYSTRKIDHDGKFLVGLMREKGVTYSSAPQSVLMSMRSTLITVITLWIPLIPLMWLLYRQLSAANSPARKQRPNGQTVGFDDVEGVDSAKVELVEIVSCLQGDINYRKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFTVSASEFVELFVGRGAARIRDLFNAARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVYVGEPDEEGRRKILAVHLRGVPLEEDSSIICHLIASLTTGLVGADLANVVNEAALLAARRGSETVAREDIMEAMERAKFGISDKQLRSSKISKELSKLFPWMPSLMGKSERRQDDLQGPLGYQSLSS*







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