SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02460 | AT | Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:506110-508092 FORWARD LENGTH=353 | SoyBase | E_val: 0 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| KOG1102 | KOG | Rab6 GTPase activator GAPCenA and related TBC domain proteins | JGI | ISS | |
| PTHR22957 | Panther | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | JGI | ISS | |
| PTHR22957:SF147 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00566 | PFAM | TBC domain | JGI | ISS | |
| UniRef100_B9SIY8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ecotropic viral integration site, putative n=1 Tax=Ricinus communis RepID=B9SIY8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N6J6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6J6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g05360 not represented in the dataset |
Glyma19g05360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g040100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05360.1 sequence type=CDS gene model=Glyma19g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAGAAAAGATTGGATGACTATGAACCTGGTCCTGTTCCTTCACCAAGAGCATTAGATAGATTTGGGTTTGTAAAACAGGATGTTAATACTTCTGAAGGCTTAGTCAAGAATAGATCAGCCTACGAGTATGAGAGATATAGGGAGGAGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGTGGCAGTGACTGGAAGCATTATCTAAGGAGAAAACCTCATGTTGTGAAAAGGCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGCAACTAGTCATATATGAGACATCTGCCTCTGAACTGGATATAATTCGAGATATTTCTCGAACCTTCCCTTCACATGTATTCTTTCAACAGAGACATGGACCTGGGCAGCGGTCCCTCTACAATGTTCTAAAAGCTTACTCTGTCTTTGACAGAGATGTAGGCTATGTTCAGGGCATGGGATTTTTAGCGGGGCTTTTGCTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTGGCATTGCTAAAAGGAGCCGTTCATGCTCCAATGGAGGGCTTGTATCTGGCAGGATTGCCTCTGGTACAGCAATACCTCTTTCAATTTGAATGCTCGGTGAGGGAGCATCTACCAAAGTTGGGAGAACATTTTTCCTATGAAATGATAAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTGATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAGATATCCAAGCGTTTAGAAGAATTGAAACAAGAGTATGAGAAGAAGAATGGAAAGATAAGACGATCTGGAGAACTTTCTGAAAAACCAATACTTCCTAGTGTCCAGGGCAATTGA
>Glyma19g05360.1 sequence type=predicted peptide gene model=Glyma19g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKKRLDDYEPGPVPSPRALDRFGFVKQDVNTSEGLVKNRSAYEYERYREERRVRKWRKMIGVGGSDWKHYLRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFECSVREHLPKLGEHFSYEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLIKLPFEKLIHALKNFPEGAMNPDTLLPLAYSIKISKRLEELKQEYEKKNGKIRRSGELSEKPILPSVQGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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