Glyma19g05290 - SoyBase

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Report for Sequence Feature Glyma19g05290

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5732768
stop:	5734564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03940	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr1:1009542-1010951 REVERSE LENGTH=469	SoyBase	E_val: 3.00E-110	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_I1N6J4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6J4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q69FA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanin acyltransferase n=1 Tax=Phaseolus vulgaris RepID=Q69FA1_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g039700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05290

Limit To All Plant Sequences

>Glyma19g05290.1   sequence type=CDS   gene model=Glyma19g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACCCTGCTGATCTTTGTCAAAAGCTGAAAGTCATAGAGCAATGTCAAGTTTCTCCTCCACCAGGTTCGGTTCCTCCAACCTCTCTTCCACTAGCCTTCCTTGACCTTCCTTGGGTTTACTGTGACACAGTGCAAAGCATTTTCTTCTTTGAGTTTCCTCACTCTTGTAACCACTTCTTGCAAACAGTGCTTCCAAATCTCAAACACTCTCTTTCCCTCACTCTCCAACAATTCTTCCCCTTCGTTGGAAACCTTGTGATCCCTCCTAAACCTAACTTCCCTCACATTCTCTACACCTCTGAAAACTCCATCTCCTTCACGATTGCAGAATCCACTGCCGACTTTCCACATCTCATAGCTGACACCGCTAGAGATGTTAAAGACTCGCACCCTTTTGTTCCTATCTTACCTACCCCAACTACCAAAGAAGATGGCACATGGTTGCTTCCTCTTATGGCCATTCAACTCACCATTTTCCCCGAGTATGGCTTCAGCATTTGCATCAGTTTTAGACACGTTGTTGCTGACGCAAGAGCATTCTTACATTTCATGAAGTTCTGGTCCTATGTTTGTAGGACAAAACATGACGTGGCAGCTACTCAAGATTTGTTACCACTGCTCAACAGGGACATCATCAAAGACCCCAAAGGGCTTAAATTCGTTTTCTCGGAGGAACTATGGAATTCTCCTATAGAAAGCATAATAAAAACACCTCCAAAAGTTGTCGACAAAAACGATGACAAAGTCCGTCACGCGTTTGTGTTGAGGCGTGACCATGTTGCGAAGCTAAAGAAATGGGTGTCGATTGAATGTAAAAGTACTTATGGGTTAGAATTAGAGTCATTGCACATATCAACCTTTGTTGTGACAAGTGCTTTGATGTGGGTTTGCAAGGTTCAATCAGAAGAAGAGGTCAATGCTATCACTATTGCAAATAATAATAATAATGATGAAATCTACAGCTTGAAGTTTCTGGGAGATTGCCGTAACCGTCCCGAATTTTCGATTCCTTCAACGTACTTTGGAAACTGCATTGTCATTCGCATTGTGTCACTAAACAGGAGCAAGCTAATGGGAGAAAAAGGAATTGTTGAGGCAGCGATTAGTATTGGAAGGGCAGTTAGAGATTTTCAGTTTGATGCTATGAAAGACGTTGAAAATTTTATGTCTCTCGGTAGAAGTGGAAGAAAAGTGAAACATTCGTCTACAATTGCAGGGTCGCCAAAGCTTGGAACATATGAGACTGATTTTGGGTGGGGAAAGCCCAAGAAGTGTGAAATACTTCACATAGAATATTCAAGAACTATCTCCCTTTCGGATTCTAGGGATGAAGAAGGTGGAGTGGAAGTTGGGCTAGCACTTGGAAGGGCTCAAATGAGCAAATTTTCTGCTATATTGGAAGAATATCTCAGAAATATTGCTATATAG

Predicted protein sequences of Glyma19g05290

Limit To All Plant Sequences

>Glyma19g05290.1   sequence type=predicted peptide   gene model=Glyma19g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPADLCQKLKVIEQCQVSPPPGSVPPTSLPLAFLDLPWVYCDTVQSIFFFEFPHSCNHFLQTVLPNLKHSLSLTLQQFFPFVGNLVIPPKPNFPHILYTSENSISFTIAESTADFPHLIADTARDVKDSHPFVPILPTPTTKEDGTWLLPLMAIQLTIFPEYGFSICISFRHVVADARAFLHFMKFWSYVCRTKHDVAATQDLLPLLNRDIIKDPKGLKFVFSEELWNSPIESIIKTPPKVVDKNDDKVRHAFVLRRDHVAKLKKWVSIECKSTYGLELESLHISTFVVTSALMWVCKVQSEEEVNAITIANNNNNDEIYSLKFLGDCRNRPEFSIPSTYFGNCIVIRIVSLNRSKLMGEKGIVEAAISIGRAVRDFQFDAMKDVENFMSLGRSGRKVKHSSTIAGSPKLGTYETDFGWGKPKKCEILHIEYSRTISLSDSRDEEGGVEVGLALGRAQMSKFSAILEEYLRNIAI*

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